| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 25 (1.180) | 21/284 | 0.1 | 96.2% | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | NC_000913 | 1755755 = | 1 (0.050) | coding (58/1413 nt) | pykF | pyruvate kinase I | |||||
TTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA > NC_000913/1755614‑1755896 | ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctccaacatgaagaaatgaaatgactgagtcagccgagaagaaattaaccgcttaatcacacattcctt > 1:175965‑M2/142‑143 (MQ=255) tgccttaattggcgaagaaacggtctaaataggctgattcaaggcatttactggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTaaaa < 1:273143‑M2/10‑1 (MQ=255) ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCt > 1:159755‑M2/130‑143 (MQ=255) ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCt > 2:380326‑M2/130‑143 (MQ=255) taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagatatgaaattactgagtcagcagagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTg < 1:99068‑M2/15‑1 (MQ=255) aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaaatcggctcaaacatgaagaaatgaaatgactgtgtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTg < 1:191934‑M2/15‑1 (MQ=255) aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaagtgtgttgccacaaacagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTgg > 1:82344‑M2/128‑143 (MQ=255) tttCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCCTCGGACCGAAAACCGAATCTGCAGAGCTCTTAGCTAAAATGCTGGACGCt > 2:311918/1‑143 (MQ=255) cGGCAGTGCTCCCAGAAAGCAAGTATCACCTGTGCTTTTCGACTTAAGTACGAGGACTGTCATGAAAAAGTCCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccct < 2:265265‑M1/143‑22 (MQ=255) gttcgtccatatagcaagtttcttcCATCCTTGTCAACTTAAAGATTAAGACGGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatat < 1:156727‑M1/131‑27 (MQ=255) tGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTACTGAAACAGACCAAAATTGTTCGCACCATCGGACCGAAAACCAAATCTGAGGAGATGTCAGggaacgagcgaacaactccctgataac > 2:281035‑M1/1‑116 (MQ=255) ctcccccagaaAGCAATTTCCTCCCTTCCTTCTCAACTTAAAGACTAATACTGTGATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatg < 2:326605‑M1/139‑28 (MQ=255) gacctgaaagcAAGTTCTTCCGCTCCTTCGCTACTTACAGACTCAGACTGTCATGAAAAAGACCAAAATTGTTGGGACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgaga < 2:171885‑M1/138‑31 (MQ=255) gAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatg < 1:358963‑M1/143‑36 (MQ=255) aaGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACCAAGACTGTCATGAAAAAGACCTAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagagcatgtt < 2:144620‑M1/143‑38 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtaagcagagaagaatttacccgcttaataggaacttccTTAGCTAAAATGCGGGACGCTGGCATgaacgttgtgggggtg > 2:215336‑M2/102‑137 (MQ=255) aGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCAGAAGAGATGTTAGagaaagaacgaacaagtccctgatatgagatcatgttt > 1:41040‑M1/1‑105 (MQ=255) gTTTCTCCCATCCTTCTCAACTTAAATATTTAGTCTGTCATTAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 1:209448‑M1/143‑44 (MQ=255) tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccATAACTAAAATGCTGAACGCTGACATGAACGAAAAGCGCCTgaacagc > 1:270816‑M2/96‑140 (MQ=255) ttCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 2:198767‑M1/143‑46 (MQ=255) aagtcatttacggaagaaacattcggctcatacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTtctc < 1:156295‑M2/50‑1 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaaacagccgagaagaatatccccggttattcgcaacttacTTAGCTAAAATGCTGGACGCTAGCCTGAACGTTATACGTCTTAACTTATCTCa > 2:170350‑M2/91‑143 (MQ=255) ccATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCACAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggagc > 1:290838‑M1/1‑93 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccaagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTATGAACTTCTCTCAAgg > 2:284950‑M2/88‑143 (MQ=255) caacgtgtgaaaagatcgtctcaaagttgaagaaatgaaatgacggagtcagccgagaagaatttccccgcttagtcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGt < 2:284223‑M2/57‑1 (MQ=255) ccTTCTAATATTAAAGTTTAAGATTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata < 1:163801‑M1/143‑55 (MQ=255) aaCTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 2:340393‑M1/1‑82 (MQ=255) aaCTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgaagacataaaacagg > 1:106955‑M1/1‑82 (MQ=255) aagactaagactGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat < 1:279076‑M1/143‑68 (MQ=255) agaccaatgctggcaggaaaAAGACCAAAGTGGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgcgctcatgtttgtcatctggagccatagaacagggttcatc < 2:60403‑M1/134‑69 (MQ=255) agaataagactGTCATGAAAAAGACCAAAATTTTTTGCACCATAGGAAAGAAAAACGAAGCGGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc < 1:112358‑M1/143‑69 (MQ=255) tatagaagcgtcgtgcaaaAGGCCAATAGTGTGTGCACCATGGGACCGAAAACCTGATCTGAAGAGATGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 2:341933‑M1/134‑71 (MQ=255) actaagactGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTCGggaaggtgcgaacaagtccctgatatgagctcatgtttgtcatctggagccatagaacagggttcaacat > 2:176392‑M1/1‑73 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGCCGCTGGCATGACCGTTATGCGTCTGAAATTCTCTCATAGAGACTATGCAAAACACggtaa > 1:127595‑M2/67‑141 (MQ=255) gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcaTTAGCCAAAATGCTGCACGCTGGCATGAACGTTATGCGTCTGAACTCATCTCATGGTGACGATGCAGAACACGCGCAGCCGATTCAGAatccg > 2:374095‑M2/51‑141 (MQ=255) aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTgc < 1:260392‑M2/94‑1 (MQ=255) agtcagccgagaagaagttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGtga < 2:151389‑M2/103‑1 (MQ=255) gcagccgagaagaatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGtgatg < 2:82344‑M2/105‑1 (MQ=255) aagattttcgccgcttattcgccccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTAACTATGCAGAACACGGTCAGCGCAGTCAGAACCTGCGCAACGTGATGAGCAAAaca > 2:358793‑M2/30‑142 (MQ=255) ggACCGAACACCGAGTCTGAGGAGAGGTTGCgcagggtgcgaacgagtccctgattggagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttatcttcgccgacagtgaattcagcagtaa < 2:92083‑M1/143‑113 (MQ=255) aatttccccgcttattcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGt < 2:225426‑M2/117‑1 (MQ=255) gtattttaattgatgttagggaatgtgtgaacatgttccttatatgaaatcatgttggtcatcgggcgccagagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac < 1:61337‑M1/132‑125 (MQ=255) cgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAAACGCCGCTAtca > 2:16709‑M2/11‑142 (MQ=255) tcttccTTAGCTACGATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCTGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCt < 2:240599‑M2/137‑1 (MQ=255) agaTGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcataaatcatcaacttaccttcgccgacagagaattcagcagtaagcgccgtcagaccagaaaagag > 1:247604‑M1/1‑9 (MQ=255) gccTTAGCTAGAGTGCTGGACGCGGGCGTGAACGTTTTGCGTCTGAACTTCTCTCATGGTGACTGTGCAGAACGCGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGa < 2:151026‑M2/140‑1 (MQ=255) cTTAGCTAAAGTGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTAAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATa < 1:158357‑M2/142‑1 (MQ=255) cTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATa < 1:198928‑M2/142‑1 (MQ=255) | TTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA > NC_000913/1755614‑1755896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |