| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 22 [0] | [0] 22 | insB1–insA | insB1, insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 21 (1.050) | 18/268 | 0.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT > NC_000913/1979138‑1979414 | ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta > 2:299991‑M2/142‑143 (MQ=255) tacacttatctaagatttttcctaaatcgacgcacctgtactcgtcactacacgcacatacaacggaggggtgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc < 2:29643‑M2/8‑1 (MQ=255) cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaaccgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTAATAc > 2:302422‑M2/132‑143 (MQ=255) taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttccataatgcgtgatgcagaccactcaacacactcaattacttaccataattaTATCATTCATgctttttc > 1:159027‑M2/126‑141 (MQ=255) taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCatacttaggt > 2:120917‑M2/126‑139 (MQ=255) cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggagggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAATCATACTTCTGTGTTAGGTGTa > 2:26961‑M2/116‑143 (MQ=255) taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgttgttgtttggcccaaacacacaattacttaacataaatgTATAAGTCATAATTTTAATTTGGGTGTAtt > 1:82179‑M2/114‑143 (MQ=255) acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttgacataaatgTATGTGTCATACTTTTGATATGAGTGTATTTCAATCt > 1:80750‑M2/107‑143 (MQ=255) tactcgtcactacacgcacatacaacggagtgggtttgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg < 1:61058‑M2/46‑1 (MQ=255) gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGCCATACTTTTGCTTTGGGTGTATTTCAATCCGTTAAAACGTTGTtcgcaacgctc > 2:345840‑M2/83‑142 (MQ=255) cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTATTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa > 1:381413‑M2/73‑143 (MQ=255) cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAACaaaa > 1:313455‑M2/73‑143 (MQ=255) gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa < 1:120205‑M2/76‑1 (MQ=255) cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCCAAAATGAAACAGGaat > 2:231127‑M2/60‑143 (MQ=255) cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 1:353018‑M2/60‑143 (MQ=255) taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATATTTTTGTTTTGTGTGTATTTCAATGTGTTAAAAAGTTGTTCGCGACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:5602‑M2/94‑1 (MQ=255) tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCCAGCACGCAACAAGGAAACAGGAATAATCGACATGAGATGtt > 1:248356‑M2/43‑143 (MQ=255) cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAATATTTAGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaa > 1:69723‑M2/31‑143 (MQ=255) caaaacactcaattacttaacataactgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCCAGCAAAACTGAAACAGGAATAATCGAAACGGGCTGTTGCGCCccgtcctca > 1:45602‑M2/29‑139 (MQ=255) aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt > 1:202715‑M2/28‑143 (MQ=255) gtacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa < 2:298667‑M2/132‑1 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTCGCAACGCTAGCAAGCAAAAATAAAACAGGAATAATCAAAATGAGATGTTACACACAGTCAAAATAACTCACCGTAAATAatcat > 1:25347‑M2/8‑143 (MQ=255) | TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT > NC_000913/1979138‑1979414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |