| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1979489 | 1 (0.050) | 38 (1.790) | 23/284 | 0.0 | 97.4% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATA > NC_000913/2289973‑2290247 | tgattctcTTTTCTGGTCTGACGGCGCTTACTGCTGAGTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATaa < 2:195015/139‑1 (MQ=17)aaagtgtctTTTCTTGTCTGACGGCGCGTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATaa < 2:1491/137‑1 (MQ=255) taTCTCTTTTCTGGTCTGACTGCGCTTCCTGCTGAATTCTCTGTCGGCGAAAGTAAGTTGATGACTCATGATGAACCCTGTGCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACg < 1:111741/142‑1 (MQ=11) tGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAAAAAGATCTCATATCAGGGACTTGTTCGCACCTTCAATAACGATGTAGccacc > 2:175434/1‑143 (MQ=255) ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGTTGATCCCTGTTCTATGGCTTTTGTTGACTATCATGAGCGCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGat < 1:16022/143‑1 (MQ=17) ttCTCTGTCTGCGAAGGTAAGTTGATGACTCATGATGAACTCTGTTCTATGGCTGCAGATGACAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCATAACGCTGTAGCCACCAGAACTGATATTGCGGAACGACaaa < 2:168380/143‑1 (MQ=18) gtcgcTGGCGGCGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCAGAACGACaaa < 2:358099/139‑1 (MQ=255) tCACGGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGTACCTTCCATAACGCTGTAGCCACCATAACAGATATTGCGGAACGACAAag < 2:333146/143‑1 (MQ=255) aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCCGAACGACAAagag > 2:190676/1‑143 (MQ=255) aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAACTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAagag > 1:281089/1‑143 (MQ=255) gCGAAGGTAAGTTGATGACTCATGAAGAACCCTGTTCTATGGCTCCAGATGACAAACCTGATCTCATAGCAGGAACTTCTTCGCACCTTCCATAACGATGTCGCAACAAAAACACCTATCTCTGCACGACAAATAGAAAAAGa > 2:200248/1‑143 (MQ=14) aaGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTCCCGAACGACAAAGAGAAACAGAAcc > 2:65432/1‑143 (MQ=255) aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCAAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAACTAATGCTGAAAGACAAAGAGAAAAAggaacaaagt > 2:40055/1‑134 (MQ=17) tgaCTCATGATGAACCCTGTTCTATGGCTCTAGATGACAAATATGATCTCATATCAGGGACTTGTTCGTTGCTTCAATAACGCTGTAGCCACCAGAACAGATATGGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAt < 1:281871/143‑1 (MQ=25) gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAtt > 2:98990/1‑143 (MQ=255) cATGATGAACCCTGTTCTATGGCTCCAAATGACAAACATGATCTCATATCAGGGCCTTGATCGCACCTTCCATAACGCTGTTGCCACCAGAACAGATATTACGGAACGACCCAGAGAAACAAAAACAGAGTGGTGCAATGAga > 2:45301/1‑142 (MQ=18) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaaa < 2:45880/143‑1 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatta > 2:363235/1‑143 (MQ=255) tGGCTCCAGAGCAGAAACATGATCTCATATCAGGGACTTGTTCGCACCCTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaa < 2:354282/143‑1 (MQ=255) tCCAGATGACAAACATGATCTCATATAAGGGACTTGTTCGCACCTTACATAACACTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAAAAGAACAAGAATGATGCGTTGAGCATACATGCTGTGAaattaatatg > 2:50041/1‑140 (MQ=25) tctcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACTCGTAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTACTGTTAAAAGCATTGGGTa > 1:8497/1‑143 (MQ=255) atCATGGACTTGTTCGCTTCTTACATAACGCTTTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaa < 2:350332/143‑1 (MQ=255) ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAAAGAAAATCATTCGCTACTATGAGACCCGGATAAAAAATGAGGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAcc > 1:277989/1‑143 (MQ=255) gTTCGCACCTTCCATAGCGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGc > 1:376930/1‑143 (MQ=255) aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATACTATGAAATTAACTGATGTTAACAGCATTGGGTACAGAAAAAACCCATCGCTCCATa > 2:362332/1‑143 (MQ=255) | AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATA > NC_000913/2289973‑2290247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |