New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1715908 =	48 (1.140)	3 (0.080)	3/262	6.1	6.0%	intergenic (‑19/+40)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
	?	NC_000913	1715934 =	49 (1.260)					intergenic (‑45/+14)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGA  >  NC_000913/1715767‑1716049                                                                                                                                              |                                                                                                                                              agatagAACGGCGCTCAGCGGCCAGACGTCCGCGCCCAGGCGGCGCACCCGAAACTCTGCCGCACTGTTACCCGCATGACCATAATCAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAg                                                                                                                                              <  2:202799/138‑1 (MQ=255)  aaTTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATCAAAACCAgg                                                                                                                                             >  2:82847/1‑143 (MQ=255)               tCAGCGGCCGGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTtct                                                                                                                                <  1:534197/143‑1 (MQ=255)               tCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGCGTtct                                                                                                                                >  1:85715/1‑143 (MQ=255)                cAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATCGCGCGCATATTTTTCATCATGTTCCCTGTATAAAAACCAAGGGGAGTGACTtctt                                                                                                                               >  2:618964/1‑142 (MQ=255)                  gCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGAGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACAAGGGGGAGAGACTTCTAAc                                                                                                                             >  1:214470/1‑143 (MQ=255)                     gCCGGACGGGCGCGCCCGGGCGGCGCATGGGAGGGTCTGCCGGAGTGTTACCCGCATGGCCGGAAACAACGTGAGACTGGATAGCGAGGATATGTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTcc                                                                                                                          <  1:119338/143‑1 (MQ=255)                                  gcCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTa                                                                                                             >  2:660524/1‑143 (MQ=255)                                      aGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCACCTTTCCACTTAATGc                                                                                                         >  2:725255/1‑143 (MQ=255)                                           gcgcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCattac                                                                                                    >  1:499206/1‑142 (MQ=255)                                             gcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTAACTCCCCCTTTCCACTTAAATCATTAttt                                                                                                  >  1:251955/1‑143 (MQ=255)                                              cATGGGAACCTCTGCCGCGCGGGTACCCGCATGTGCATGAACAACGTGAGACTGGATAGCGAGGATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTc                                                                                                 <  1:517059/143‑1 (MQ=255)                                                 cGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                              <  1:26980/143‑1 (MQ=255)                                                 cGGAAACGCTGCCGCACTGTTGCCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                              <  2:411586/143‑1 (MQ=255)                                                  ggAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGc                                                                                             >  2:680487/1‑143 (MQ=255)                                                     agctctGCCGCACTGTTACCCGCATGACCATAAACGACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                          <  1:385728/141‑1 (MQ=255)                                                     aagtctGCCGCAGTGTTACCCGCATGACCATAAACATCGGGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACGCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                          <  1:381288/140‑1 (MQ=255)                                                        tctGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAACACCAGGGGGAGTAATTTCTCACTCCCCCTTCCCACATAATGCATCATTTCCAGCAAATCa                                                                                       >  1:535521/1‑143 (MQ=255)                                                               cACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTa                                                                                <  2:425848/143‑1 (MQ=255)                                                                       cccGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                        <  2:408031/143‑1 (MQ=255)                                                                       accccATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                        <  2:20108/139‑1 (MQ=255)                                                                            aTGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTACCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTCTACcg                                                                   <  2:47743/143‑1 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATGATGTTCCCTGTATAAAAACCAGGGGGAGTGAGTTCTCACTCCCCCTTTCCGCTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTAACGCGaag                                                              >  2:68182/1‑141 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                              <  2:483206/143‑1 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                              <  1:339746/143‑1 (MQ=255)                                                                                   tataccaagTGATACTGGAGATCGACAATATTTTTAATCCTGTTCCTTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCTCCTTTCCACTTGAATCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCa                                                            <  1:724776/135‑1 (MQ=255)                                                                                       caacGGGAGACTGTATAGCCGGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTaa                                                        <  1:316094/143‑1 (MQ=255)                                                                                            tGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTCAATGCATTATTTCAAGCCACTCAGCCAGTAACTCTTTTTACCGCGACGCAGTAAGGTaa                                                   >  1:321375/1‑143 (MQ=255)                                                                                                aCTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTACCGCGACGAAGTACGTTAAAACg                                               >  2:5486/1‑143 (MQ=255)                                                                                                  atgATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGAc                                             <  2:366426/141‑1 (MQ=255)                                                                                                      tAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGCGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCaaa                                         <  1:83213/143‑1 (MQ=255)                                                                                                         cGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGCCCAAACAg                                      >  2:13261/1‑143 (MQ=255)                                                                                                          gagaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGa                                     >  2:659213/1‑143 (MQ=255)                                                                                                           ttcatatTTTTCATCATGTTCCCTGTATAATCATCAGTGGGAGTGATTTCTCACTCCTCCTTTCCACTTAATGCTTTATTTCCAGCAAATTATACAGTAATTCTTTTTACCTCTACGTAGTAAGGTAAAACGACCAAACAGAc                                    <  1:73481/140‑1 (MQ=255)                                                                                                            gaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACg                                   <  2:14474/143‑1 (MQ=255)                                                                                                             aaTATTTTTCATCACGTTCCCTGTATAAAAGCCAGGGGGAGTGATTTCTCGCTCCCCCTTTCCACTTAATGCATGACTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGa                                  <  2:700303/143‑1 (MQ=255)                                                                                                               tatTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGCCGGTAATTCTTTTTACCGCGACGCCGTAAGATAAAACGACCAACCCGACGAtc                                >  1:74971/1‑143 (MQ=255)                                                                                                               tatGTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGAtc                                <  1:192201/143‑1 (MQ=255)                                                                                                                       atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTCCCGCGACGCGCTAAGGAAACACGACCAAACAGACGGccttctacta                        >  1:477112/1‑142 (MQ=255)                                                                                                                       atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                        <  2:212249/143‑1 (MQ=255)                                                                                                                       atcatGTTCCCTGTAGAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                        >  1:617274/1‑143 (MQ=255)                                                                                                                              tCCCTGTATAAAAACAAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATGTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAaagaa                 <  1:483135/143‑1 (MQ=255)                                                                                                                                  tGTATAACAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTAt             <  1:201482/143‑1 (MQ=255)                                                                                                                                     ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa          <  2:14832/143‑1 (MQ=255)                                                                                                                                     ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa          >  2:682836/1‑143 (MQ=255)                                                                                                                                       aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCACATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg        >  1:440881/1‑143 (MQ=255)                                                                                                                                       aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg        >  2:3904/1‑143 (MQ=255)                                                                                                                                             cAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGa  <  2:511624/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              AAATTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGA  >  NC_000913/1715767‑1716049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.