New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3222459 =	42 (1.000)	3 (0.080)	3/258	6.0	7.1%	intergenic (+12/‑172)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit
	?	NC_000913	3222491 =	40 (1.050)					intergenic (+44/‑140)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATG  >  NC_000913/3222331‑3222601                                                                                                                                 |                                                                                                                                               gagaTGTTGGGAAGTCTGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATc                                                                                                                                  <  2:367667/143‑1 (MQ=255)         gggAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACCCTGTCCGGCACTCGGTTTTGc                                                                                                                          >  2:486711/1‑143 (MQ=255)         gggAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGc                                                                                                                          >  2:206021/1‑143 (MQ=255)           gAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCg                                                                                                                        >  2:292020/1‑143 (MQ=255)               tCAGGGCGTGAACCTGGTGTATTAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACa                                                                                                                    <  1:100531/143‑1 (MQ=255)               tCAGGGCGGTAACCTGGTGTATGAAAAAGCACGCGATGGTCGCGCGCTGGCGCTGCTAGACTTCCTTCCCAGCCACTTAAAACTGCGCGCCACGACCCGTTAAAGCCCCTTACACACTGTCCGGCAATCGCCTTAGCCgcagg                                                                                                                    >  1:76124/1‑139 (MQ=255)                      gTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGtgctgc                                                                                                             >  2:141063/1‑143 (MQ=255)                      gTTAACCTGCTGTATGAAACAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGtgctgc                                                                                                             <  1:460702/143‑1 (MQ=255)                           ccTGGTGTATGAAACAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGttt                                                                                                        <  1:167967/143‑1 (MQ=255)                                    tGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAGACTGCGCGGCACGACCCGTTGAATCTCCTTCCACACTGGCGGGCGACCGTTTTTGCCGGAGAGTGCGGCCGGTTATATTcaag                                                                                               >  1:24373/1‑140 (MQ=255)                                         aaGCCCGCGATGGTCGCGCGCTGCCCCTGTTAGTCTGCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCa                                                                                          <  1:475207/143‑1 (MQ=255)                                            cccGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGtt                                                                                       >  2:272978/1‑143 (MQ=255)                                               gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTaaa                                                                                    <  2:323802/143‑1 (MQ=255)                                               gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTCATCCCGTTaac                                                                                    >  2:553982/1‑142 (MQ=255)                                               gcgATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTGTCGTGATCCAGTTaaa                                                                                    >  1:635274/1‑143 (MQ=255)                                               gcgATGGTCGCGCCCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGTTGCCGTTTATTTTCGTGATCCAGTTaaa                                                                                    <  2:379736/143‑1 (MQ=255)                                                         cgcgcTGCCGCTGTTAGTCTTCGTTCCCAGCAAATGAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGGTTTTGCGGGGCAGTGCTGCCGTTTATGTTCGGGATCCAGTTAAAGTGAATGCaa                                                                          >  2:462717/1‑142 (MQ=255)                                                            gcTGCCGCTGTTAGTTTTTGTTCTCAGTAAAATAAAACGCTGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCGCTTAAAGTaaagagattta                                                                       >  1:679856/1‑135 (MQ=255)                                                              tGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTCCACCCTGTCCGGCAATCGTTTTTGCCGGACAGTGCGGCCTTTTATTTTCCTGATCCATTTAACGTAAATACATTTccc                                                                     >  2:260130/1‑143 (MQ=255)                                                               gcggcggtaaGTCTCCGGCCCCAGCAAGTGAAAGCTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCt                                                                    <  2:357831/134‑1 (MQ=255)                                                                        agccTTCGTGCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTCCACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACtttt                                                           <  1:594610/140‑1 (MQ=255)                                                                        aGTCTGCGTGCCCAGCAAATTAAAGCTGCGCGGCACGACTCGTTAAATCTCCTTTCTCACTTTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACtttt                                                           <  1:553982/143‑1 (MQ=255)                                                                          tCTTCGTTCCCCGCACATTAAACCTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                         <  1:459511/143‑1 (MQ=255)                                                                          tCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACAACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                         <  2:133506/143‑1 (MQ=255)                                                                          tCTTCGTTCCCACATTATTAAATCTGCGCGTCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTa                                                         <  1:2707/143‑1 (MQ=255)                                                                                    cagagaaTTAAGGCTGCGCGGCACGACCCGTTGAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAAttt                                               <  1:506413/138‑1 (MQ=255)                                                                                     aGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGCCTTTGCCGGACAGTGCTGCCATTCCTTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAATAAAAAttat                                              >  1:153746/1‑141 (MQ=255)                                                                                      gCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTa                                             <  1:292020/143‑1 (MQ=255)                                                                                       cAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACCCACTGTCCGGCACTCGTTTTTGCCGGCCCGTGCTGCCGCTTATTTTCGTGATCCAGTTAAAGTAACTGCCTTTACCTGCCACTTTTTCCTAAACATCTTAc                                            >  1:620666/1‑143 (MQ=255)                                                                                        aaaTTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACt                                           >  2:470499/1‑143 (MQ=255)                                                                                              gaaCGGCGAGGCACAACCCATTAAATCCCCATACACACCGGCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTc                                     <  2:73632/142‑1 (MQ=255)                                                                                                 ctccgccacACGACCCGTTAAATCCCCTTACGCCCTGTCCGGCAATCCTTTCTGCCGGACAGTGCTGCCGTTTATTTCCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTcccc                                  <  2:343566/135‑1 (MQ=255)                                                                                                  tGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCa                                 <  1:523568/143‑1 (MQ=255)                                                                                                   gcgcGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGCCAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTCAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAg                                >  1:91868/1‑143 (MQ=255)                                                                                                               ccGTTAAATCCCCTTACACACTGTCCGGCAATCGGTGGTTCCGGACACTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGCAAATGCATGTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACaaa                    >  1:295706/1‑143 (MQ=255)                                                                                                                cGTTAAATCCCCCTACACCCTGCCCCTCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAAc                   <  1:475409/143‑1 (MQ=255)                                                                                                                    aaaTCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTAcc               >  2:549997/1‑143 (MQ=255)                                                                                                                       tCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATc            >  2:417973/1‑143 (MQ=255)                                                                                                                       tCCCCTTACACACTGTCCGGCAAGCGTTTTTGGCGGCCGTTACGTCCGGTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATc            <  1:152151/143‑1 (MQ=255)                                                                                                                        ccccTTACACACTGTCCGGCAATCGTTTTTTTTTTTCTTTGCTGCCGTTTATTTCCTTGATCCATTTAAAGTGAATGCATGTACCTGCTAGTTTTTATTCAAAATTTTACTTAACTCCCCTGCAATTACACATACTACCATct           >  1:245338/1‑142 (MQ=255)                                                                                                                           cTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTCTTTTCGTGATCCAGTTAGCGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCACTTACACAAACTACCATCACCa        >  1:323475/1‑143 (MQ=255)                                                                                                                           cTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTCAACTCCCCAGCCATTACCCAAACTACCCTCACCa        >  1:703878/1‑143 (MQ=255)                                                                                                                                 cacTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAACTTTACTAAATTCCTCTCCATTTACACAAACTACCATCACCAACAATg  >  1:150974/1‑143 (MQ=255)                                                                                                                                 |                                                                                                                                               GAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATG  >  NC_000913/3222331‑3222601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.