New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4179655	42 (1.000)	3 (0.070)	3/272	6.3	8.2%	intergenic (+73/‑340)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
	?	NC_000913	= 4179765	27 (0.670)					intergenic (+183/‑230)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTG  >  NC_000913/4179517‑4179796                                                                                                                                           |                                                                                                                                              aTCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATCTCCGAGat                                                                                                                                           >  1:305277/1‑143 (MQ=255)  tctcCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGata                                                                                                                                          >  1:307255/1‑143 (MQ=255)      caccaccaTGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTGAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTAGATCCGAGATGTTCg                                                                                                                                      >  2:595860/1‑143 (MQ=255)       accaccaTGGTGGCAGGGGTTGCAGTTGACCAGGCGGGCCTGAGCGCTTCTGGAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCgg                                                                                                                                     <  1:588118/143‑1 (MQ=255)              tGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTgg                                                                                                                              <  2:543718/143‑1 (MQ=255)                   gCAGGCGTTGCAGTTGACCAGTCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGCCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAgg                                                                                                                         <  2:268061/143‑1 (MQ=255)                     aGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcg                                                                                                                       <  2:179044/143‑1 (MQ=255)                       gtgtTGCAGTTGACCAGGCTGGCCTGAGCGCTTCGGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcggc                                                                                                                     <  1:345606/143‑1 (MQ=255)                       gggtTGCAGTTGACCAGGCTGGCCTGAGCGCTTCGGTAAACTAAGGCCTTTACGTGGGCGGTGATTTTGTCTACAAGCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcggc                                                                                                                     <  1:264768/141‑1 (MQ=255)                          ttGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAAc                                                                                                                  >  2:673254/1‑143 (MQ=255)                           tGCAGTTGACCAGGCTGGCCTGAGCGCTGCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACt                                                                                                                 <  2:62745/143‑1 (MQ=255)                                ttGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATAACCGGGGTATTCGGGTAGTGGCAAGGCGGCGACggaggg                                                                                                            >  2:152483/1‑141 (MQ=255)                                 tGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACtgagtga                                                                                                           <  2:256919/143‑1 (MQ=255)                                 tGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACtgagtga                                                                                                           <  2:225247/143‑1 (MQ=255)                                     cAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATCTTCGGGCAGGGGCAAGGGGGCagcggccggcgtcg                                                                                                       >  2:35334/1‑130 (MQ=255)                                        gCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGGGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCATGGCGGCAAAtgcgtgagcgggcg                                                                                                    >  1:217812/1‑137 (MQ=255)                                           ggCCTGCGCGCTTCTGTAAACTGATGCCTTTACGGGGGCGGTGATTTTGTCTACAATCGTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGa                                                                                                 <  1:168536/143‑1 (MQ=255)                                           ggCCTGAGCGCTTCTGTAAACTGCTGCCTTCACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGa                                                                                                 <  1:168707/143‑1 (MQ=255)                                            gCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAg                                                                                                <  1:227665/143‑1 (MQ=255)                                                     cTTCTGTAAGCTAGCGCCTCTACGTCGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAAGGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTaa                                                                                       <  1:689162/143‑1 (MQ=255)                                                         tGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATCCGGCTCTTGGCATGGCGGCCAGCGAATGACTCGCCAGGAGCCTCGCtgggtat                                                                                   >  1:549249/1‑137 (MQ=255)                                                         tGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCATAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGGGCATAGCTagccac                                                                                   >  1:687024/1‑138 (MQ=255)                                                           tAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACAGAGTGAGTCGCCAGGAGCATAACAAACTgtgt                                                                                 >  1:68918/1‑143 (MQ=255)                                                                tacttccTTTACGTGGCCGGTGATTTTGCCTCCAATCTTACCCCCACGTATAATGCGTAATGCAGACGTAGATCCGAGATATTCGTGTTGTGGCACGGCGGCTACTGAGTGAGTCCCCAGGAGCATAGCTAACTATGTGACTg                                                                            <  2:29882/138‑1 (MQ=255)                                                                tAATGCCTTTACGTGGGCGGTGATTTTGTATACAATCTTACCCCCACGTATAATGCTTAATGCAGACAAATATTCTAGCTAGTCGGGTTGAGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTAtttcacga                                                                            >  1:87400/1‑136 (MQ=255)                                                                              gggCGGTGATTTTGTCTGCAATCGTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaagga                                                              <  1:561187/143‑1 (MQ=255)                                                                               ggCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaaggaa                                                             <  2:439550/143‑1 (MQ=255)                                                                               ggCGGGGATTTTGTCTACAATCTTACCCCCACGTATAATGCCTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaaggaa                                                             <  1:224991/143‑1 (MQ=255)                                                                                gCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCGGGCGCATAGCTAACTGTGTGACTGGTGccgacgacggcgg                                                            >  2:298825/1‑131 (MQ=255)                                                                                  ggTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTGGCCAGGAGCATAGCTAACTAGGTGACTGGTGGGGATGCGGGGAGcc                                                          >  2:109190/1‑143 (MQ=255)                                                                                          tGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACCTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGt                                                  <  1:99865/143‑1 (MQ=255)                                                                                              tACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGCGTGAGCCGCCAGGAGCAGAGCTAACTATGTGACTGGTGCGAATGAAGGAGGCCAACGCCGTccca                                              >  1:385092/1‑143 (MQ=255)                                                                                                   tcctACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGGGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTg                                         <  2:546596/140‑1 (MQ=255)                                                                                                         ccccACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGGCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGGATGAAGGAAGCCAACGCCGTCACAAGCTGGCTAGc                                   >  2:720494/1‑143 (MQ=255)                                                                                                         ccccACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTCGTGGCACGGCGGCAACTGAGTGAGCCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGACGGAAGCCAACGCCGGCACAAGCTGAATCGc                                   >  2:77664/1‑143 (MQ=255)                                                                                                            cACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGAc                                <  2:307255/143‑1 (MQ=255)                                                                                                                   caTGCTTAATGCCGACGTATATCCGAGATATTCGGGTGGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                         <  2:54945/142‑1 (MQ=255)                                                                                                                   aaTGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                         <  2:218346/143‑1 (MQ=255)                                                                                                                         gactGCCGAGGTATCTCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGAt                   <  1:146617/140‑1 (MQ=255)                                                                                                                                  ctgatagCCGTGTTATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGtt          <  1:79170/140‑1 (MQ=255)                                                                                                                                         ccGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGCGAGTCGCCAGGAACATAGCTAACTATGTGACCGGTGCGAATGCAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGCTTTGTTCGTTGGAGCCt   >  2:310515/1‑143 (MQ=255)                                                                                                                                          cGAGATATTCGGGTTGTGGCAAGGCGGCAACGGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACGGGCGCGTCGCAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGGTGTGGTCGTTGGAGCCTg  >  1:398342/1‑143 (MQ=255)                                                                                                                                           |                                                                                                                                              ATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTG  >  NC_000913/4179517‑4179796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.