New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1396531 =	NA (NA)	15 (0.370)	3/272	6.3	NA	coding (456/1017 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913	= 1428264	NA (NA)					coding (463/981 nt)	insH1	IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

TTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAA  >  NC_000913/1428131‑1428406                                                                                                                                      |                                                                                                                                                tgggCCGCGGTGGTGACCAGGCGGTGGGTTCGGCCACTGTTGGCATCGCCACCGATGTGGGCCCCGGTGGGGTGTGGCGGCTGATTACCGGTCTGGGTCTGATGCCTCTCCGGATGGCGTGGCTGCTCTTTGTTCTTGGTaga                                                                                                                                        <  1:325971/141‑1 (MQ=2)      cgcgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                                                                                                   <  2:557742/143‑1 (MQ=32)          gtggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTCTTCTTGGTAGCGCTGGGTGc                                                                                                                               >  2:354887/1‑143 (MQ=17)           tggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCGGCGCTTTGTTCTTGGTAGCGCTGGGTggc                                                                                                                              >  2:392990/1‑141 (MQ=12)            ggcgccccggCTGTGCGTCAGGCCCCGCTTGGCATCGGCACCAATGTGGGCCTTCATGCCAAAGTGCCAGGGAGTGCCTGTCTTGGGCTGATGCATCTCCGGCTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCt                                                                                                                             <  1:104346/135‑1 (MQ=11)             gtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTc                                                                                                                            >  2:248696/1‑143 (MQ=32)                  cAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAatga                                                                                                                       >  2:30078/1‑143 (MQ=32)                        gtgGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCGGGGTGCCTCAATGAtggtgg                                                                                                                 >  2:401915/1‑143 (MQ=17)                           gtctgcgCCACTCTTCGCATCGCCCCCCGTGTGGGCCTTCATGCCAAAGTGCCGCGGGTTGCCTTTCTTGGGCTGGTGCATCTCCGGATCGCGGTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCAt                                                                                                              <  1:146582/137‑1 (MQ=11)                             tCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCGAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAAGGATGGTGGCagac                                                                                                            >  2:539124/1‑140 (MQ=12)                               aGGCCTCTTTTGGCATCGACACCAACGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                                                                                          <  2:204901/143‑1 (MQ=255)                                  ccACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTGGAGCGGGGGGCCTCAATGATGGTGGCATCCACCaa                                                                                                       >  2:197472/1‑143 (MQ=12)                                   cACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGGTGGTGGCATccagcaga                                                                                                      >  2:511587/1‑141 (MQ=16)                                     ctctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCAGCAAAGt                                                                                                    >  2:393962/1‑143 (MQ=37)                                      tctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTg                                                                                                   >  1:258850/1‑143 (MQ=37)                                         cggCCTCTACAGCCATGCGGGCCTTTATGCCAAAGTGCCACCGATTGCCTTTCTTGGTCTGATGCATCGCCGGATCGCGCCGCTGCTCTTTGTCCTTGGTAGAGCTGAGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCt                                                                                                <  2:41517/142‑1 (MQ=11)                                          ggCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTCATGCACATCCGGGGCGCGTTGCTGCTCTGTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCtt                                                                                               <  2:729544/143‑1 (MQ=14)                                             atcgtcaggtttgtgGGCCTTCATGCCATAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGACCGCGTTGCTGCTCGTTGTTCTTGGTAGGGCTGGGTGACTCAATGATAGTGGCATCCACCAAAGTGCCTTggg                                                                                            <  1:158774/132‑1 (MQ=14)                                              tCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGt                                                                                           >  2:697833/1‑143 (MQ=40)                                               ccgcacCAATGTGGGCCTGCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCCAAggcactttggtg                                                                                          <  2:42422/140‑12 (MQ=11)                                                gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCTTTGGGtca                                                                                         >  2:60756/1‑143 (MQ=255)                                                 acacCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCCCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGCGCCTTGGGtcat                                                                                        >  1:160119/1‑143 (MQ=255)                                                     cAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATg                                                                                    >  2:6198/1‑143 (MQ=39)                                                         gtgGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGc                                                                                <  2:83232/143‑1 (MQ=255)                                                                 tCATGCGAGAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCAGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCg                                                                       <  1:311507/143‑1 (MQ=255)                                                                 tCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCg                                                                       <  2:528446/143‑1 (MQ=255)                                                                  cATGCCCACGTGCCACTGATGGCCTTTCTGGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCgg                                                                      <  1:177329/143‑1 (MQ=14)                                                                     ggcAAAGTGCCACTGAGTGCCTGTCTTGGTCTGATGCATCTCCGGATCGCGGTGCTGCGCTTTGTTCTTGGGAGAGCTGTGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGgcca                                                                   <  2:557348/141‑1 (MQ=14)                                                                     gacAAAGTGCTACTGATTGTCTTTTTGGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGTTGGCATCCACCAAAGTTCCTTGGGTCATCATGACGCCTG‑CTTCGgcca                                                                   <  1:300622/141‑1 (MQ=14)                                                                     gCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGgcca                                                                   <  2:16248/143‑1 (MQ=255)                                                                      ccAAAGTGCCACTGATTGCCCTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGgccag                                                                  <  2:524517/143‑1 (MQ=255)                                                                          aGTGCGACTGATTGCCGTGCTTCGTCTGATGCATCTCCGGATGGCGTTGCTGCTCTTTGTTCTTGGTAGCGGTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGccagccag                                                              <  1:480776/143‑1 (MQ=14)                                                                              ccACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGGTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCgcc                                                          >  1:368441/1‑141 (MQ=255)                                                                               cACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGAtt                                                         >  2:609435/1‑143 (MQ=40)                                                                                 cTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGATGCCTG‑CTTCGGCCAGCCAGCGATTGa                                                       >  2:481370/1‑143 (MQ=255)                                                                                      tGCCTTGCTTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTc                                                  <  1:64517/143‑1 (MQ=255)                                                                                        ccTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGCTTGATGGTCtt                                                >  2:681788/1‑143 (MQ=255)                                                                                        ccTTGCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTGTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCCTGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCtt                                                <  2:540268/143‑1 (MQ=255)                                                                                                            ctcCGGATCGCGTTGCTTCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGtt                            <  2:314295/143‑1 (MQ=255)                                                                                                               cGGATGGCGTGGCTGCTCGTTGCTCTGGGGAGGGCGGTGGGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAt                         <  1:643005/143‑1 (MQ=14)                                                                                                                ggATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtg                        <  2:258850/143‑1 (MQ=255)                                                                                                                   tCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGTCTTGGGTGATCAACACGAGTGACCTAAG‑GACCCAGCGATTGATGGTCCTGCACAATGGACGGGCCAGTTGAtgctg                     >  1:712813/1‑143 (MQ=14)                                                                                                                    cgcgTTGCTGCTCTTTGTGCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctgc                    <  2:64700/143‑1 (MQ=255)                                                                                                                              ctgtttGTTGTTGGTCGAGCTGGGTGCCTCAATGACGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCGAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGt          <  1:123308/140‑1 (MQ=14)                                                                                                                              ctctTTGTTCCTGGTAGAGCTGGGTGCCTCAATGATGCTGGCACCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGt          <  1:710641/143‑1 (MQ=255)                                                                                                                                     ttCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCGG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCAAGTGGAAGCGACTCGGGCAGGTGGCGGaa   >  1:474993/1‑143 (MQ=14)                                                                                                                                      tCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGCCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTCGCGGgaa  >  1:340622/1‑143 (MQ=255)                                                                                                                                      |                                                                                                                                                TTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTG‑CTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAA  >  NC_000913/1428131‑1428406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.