New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2434254	35 (0.830)	3 (0.070)	3/274	6.3	7.9%	coding (486/660 nt)	dedA	DedA family inner membrane protein
	?	NC_000913	= 2434267	36 (0.890)					coding (473/660 nt)	dedA	DedA family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGA  >  NC_000913/2434146‑2434401                                                                                                                          |                                                                                                                                        aaCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACa                                                                                                                   >  1:656672/1‑143 (MQ=255) aaCCACAATAATCCCGACGATCAGCAGCTTAAGGATATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCAGCGTAGGCAAAAAGCAGTACCCACAACCGTCCGCCTATCACGTTATAAG‑CGGCAGAATGACgagaccaca                                                                                                                   >  1:263842/1‑135 (MQ=255)                  cgaTCAGCAGCCTAAGGGTATCCACAACCTGCCCGACTGTGCCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTGCCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGca                                                                                                  <  2:23874/143‑1 (MQ=255)                           gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                                   >  2:503917/1‑133 (MQ=255)                           gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                                   <  1:503917/133‑1 (MQ=255)                            cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGTCTGGGTGGGTAAAAACCAGTATGTCGCAGACCCCACCCATCACGTTATAAG‑CGGCGCAATGACGGTACGACATGTGGCCCATTCCCGCCACAAACgggg                                                                                        >  2:730333/1‑143 (MQ=255)                            cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACgggg                                                                                        >  2:47912/1‑143 (MQ=255)                              tAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCg                                                                                      >  2:589250/1‑143 (MQ=255)                               aaGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAACGCAGTACCCACAACAGTGCGCCGCTCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGCCCCATGCACGCAACAAACGGGGCGa                                                                                     >  1:547106/1‑143 (MQ=255)                                aGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGaa                                                                                    <  1:67429/143‑1 (MQ=255)                                     gtgcttagcgaTCTGGATGTTACCGCACAAATAGCCTCCGTAGGTAAAAAGCAGTACCCGCAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAACGACGGTACGACAGGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTc                                                                               <  1:319782/133‑1 (MQ=255)                                       attacaCCATCGGGATTGTACCGAAGCAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGAGCACGTTATAAG‑CGGCGAAATGACGGTACCACATGTGGCCCATTACCGCAACAAACGGGGCGAACGTACTg                                                                             >  1:173177/6‑143 (MQ=255)                                               aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCgg                                                                     >  1:291049/1‑143 (MQ=255)                                                tCGGGATTGTACCGAAGAAATAGCCTGCGTAGGAAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAAGGACGGTACGACAGGTGACCCATACCCGCAACAGAGGGGGCGAACGTTCTGAGGagaggc                                                                    >  1:711891/1‑138 (MQ=255)                                                 cGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGca                                                                   <  2:156631/143‑1 (MQ=255)                                                           ccGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGc                                                         <  2:115594/143‑1 (MQ=255)                                                            cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACCACCCGGGCTACGGTTCTGACGATCGGCACAAAACGGGCg                                                        >  2:567839/1‑143 (MQ=255)                                                                 aaaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCGCAAAACGAGCGAGaat                                                   >  1:692588/1‑143 (MQ=255)                                                                     aGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCCCAAGACGGGCGAGAATAATc                                               >  2:131454/1‑143 (MQ=255)                                                                      gCCTGCGTAGGTAGAAAGCAGTACCCACGACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAACCg                                              <  1:396269/143‑1 (MQ=255)                                                                         tGCGTAGGTAAAACGCAGTACCCACAACAGGGCGCCGATCACGTTATACG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGttt                                           <  2:299119/143‑1 (MQ=255)                                                                          gCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCCCGCCATAT‑ACGGTACGGCGGGCGGCCCATTCCCGCAACAAACAGGGCGAACGCTCTGACGATCGGCACACAACGGGCGAGCATAATCGtttt                                          >  1:713867/1‑143 (MQ=255)                                                                              aGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGGTCGGCGCAAAAACCGCGACAATACTCGTTTTgccg                                      >  2:691267/1‑143 (MQ=255)                                                                               tgtgtaaaGCTGTTCACACAACAGTGCGCGGGTAACTGTATAAG‑AGGCGAAGTGACGGTACGTCATGTGCCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTgccgc                                     <  1:285319/138‑1 (MQ=255)                                                                                 tAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGACGAAATGACGGTACGACATGGGGCCCATTACCGCAACAAACGGGGCGAACGACCTGACGATCGGCACAAAACGGGCGAGAGTAATCGTTTTgccgccg                                   >  1:553875/1‑142 (MQ=255)                                                                                 tAAAAAGCAGTACCCACAAAAGTGCGCCGATCACGGTATAAG‑CGGCGCAATCACGGTACGACATGTGGCCCACACCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGCACAGAACGAGCGAGaataacagctctgcagcaa                                   >  1:124891/1‑129 (MQ=255)                                                                                      aGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGttt                              <  2:466225/143‑1 (MQ=255)                                                                                              ccACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGACCGGTCTGACGATCGGCACAAAACGGGCGAGAATAATGGTTTTGCCGCGATGTGGCTCATaag                      >  2:119700/1‑142 (MQ=255)                                                                                               cacaACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATaaaa                     <  2:383284/143‑1 (MQ=255)                                                                                                   acaGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGa                 <  1:47912/143‑1 (MQ=255)                                                                                                      gTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATgg              <  2:668901/143‑1 (MQ=255)                                                                                                       tGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGGACAAAACGGGCGAGAATAATCGTTTTGCCGCCGTGTTTCTCATAAAACTGATggg             >  1:426418/1‑143 (MQ=255)                                                                                                         cgcCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGtt           <  1:28510/143‑1 (MQ=255)                                                                                                             gATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAACCCGGGCGCGAATAATCGGTTTGCCGCCATGTTTCTCATAAAACTGATGGGTATTGt       >  2:4051/1‑143 (MQ=255)                                                                                                              agcACGTTAGAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATGCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTc      <  1:730333/141‑1 (MQ=255)                                                                                                                  cGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCgaga  >  2:162484/1‑143 (MQ=255)                                                                                                                          |                                                                                                                                        AACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGA  >  NC_000913/2434146‑2434401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.