| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2532464 | 53 (1.260) | 3 (0.070) | 3/272 | 6.3 | 5.7% | coding (58/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| ? | NC_000913 | = 2532492 | 48 (1.190) | coding (86/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCTGAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTAATACCGGGATT > NC_000913/2532351‑2532631 | ctctGAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCCGTAACGGACGACTTCTg > 2:109444/1‑143 (MQ=255) tctGAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTgg > 2:638986/1‑143 (MQ=255) gAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGa < 2:341575/143‑1 (MQ=255) ggTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGcccaaggc > 1:507925/1‑136 (MQ=255) ggTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTg < 1:203902/143‑1 (MQ=255) gCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAAtc > 1:565557/1‑143 (MQ=255) cTACCTGTTGTATCCCAATTTCATACAGGTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGGTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGGGGAAtct > 2:522623/1‑143 (MQ=255) tACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTCACGGACGCATTCTGGCGAAGGTGGAAtctc > 2:283464/1‑143 (MQ=255) gttgtATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAAc > 2:699023/1‑143 (MQ=255) gttgtATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAAc > 2:1045/1‑143 (MQ=255) ttccAATTTCATGCAGTTAAGGACAGGCCATGTGTAAGATTTTTGAAGATACCTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGc < 1:533012/141‑1 (MQ=255) tCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCCTTCTGGCGAAGGTGGAATCTCGTAACCCCAGc > 2:661850/1‑143 (MQ=255) tCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTGCGCCTGAATCGCATCGGTAACGGACGCCTTCTGGAGAAGGTGGAATCGCGTAACCCCCGc > 2:422296/1‑143 (MQ=255) ccAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGCAGGTGGAATCTAGTAACCCCAGcct > 1:675360/1‑141 (MQ=255) ccAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCtt > 1:194869/1‑143 (MQ=255) aaTTTCATACAGTTAGGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCGGCGTCa > 1:406448/1‑143 (MQ=255) ttccATACAGTTAAGGACAGGCCATGAGTAAGCTTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGc < 2:319102/140‑1 (MQ=255) cATGCAGTTAAGGACAGGCAAGGAGCAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGtt < 1:513616/143‑1 (MQ=255) acaCATTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATACCTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTa < 1:560086/141‑1 (MQ=255) ttAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGTACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGGTAAGTGcc > 1:128545/1‑143 (MQ=255) tgaaGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGcc < 1:186156/141‑1 (MQ=255) tAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCg < 2:159926/143‑1 (MQ=255) caGGACGGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGt < 1:66373/142‑1 (MQ=255) gACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGCTACCGGACGCATTCTGGCGAAAGTGGAATCTCGTACCCCCAGCCCCAGCgctgcgtgcagcccg > 1:673122/1‑129 (MQ=255) ccAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGCCACACGCCGCTGGTTCGCCTGAATCGCATCGGGAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCg < 1:200650/142‑1 (MQ=255) cAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCgg < 2:352531/143‑1 (MQ=255) gCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGT‑ACCCCAGCCTCAGCGTTAAGTGCCGTATCGGTGcc > 1:143231/1‑143 (MQ=255) ctGAGGAAGATGTTTGAGGGTAACTCGCGGGCGGGCGGTCACACGCCGCTGGTTCGCCGGAGTCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCGCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCaa < 1:12238/142‑1 (MQ=255) aGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGagt > 2:107830/1‑141 (MQ=255) aTTTTGGAGGATAACTCGCTGACTATCTGTCACACGCCGCTGGTTCGGCTGAATCGAGCCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTg < 1:352474/143‑1 (MQ=255) tttttGACGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCCTCGGTAGCGGTTGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTgg < 2:535033/143‑1 (MQ=255) tttttGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTgg < 2:433371/143‑1 (MQ=255) aaGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGCAGGTGGAATCTCGTAACCCCAGCTTCCGCGTGAAGTGCCGTAACGGTGCCCACACGCATCGGGATGcc > 1:498472/1‑143 (MQ=255) tCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAgcg > 2:285237/1‑143 (MQ=255) gCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGcgcg < 1:283464/143‑1 (MQ=255) gTCACGCGTCGTTGGTTCCGCTGAATCGCATAGGGAACGGACGCATCCGGGCGCAGGTGGAATCTCGCAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGaaa < 1:152791/143‑1 (MQ=255) tCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAGGCGCGACGTGCTGacgc > 1:386514/1‑140 (MQ=255) acGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTTGAAACAgg > 2:267529/1‑143 (MQ=255) acGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAgg > 1:731486/1‑143 (MQ=255) ccgcTGGGTGGCCTGACTCGCATCGGTAACGGACGCATTCGGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATGGGTGTCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGt < 2:519025/143‑1 (MQ=255) cgcCGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGACAGTGGAAGCTCGTAACCCCAGCTCCAGCGTTAACTGCCGGATCACTGCCAACATCATTGACGACGCCGAAAATCGCGACGTGCAGAAAGCAcgcgct > 1:118091/1‑141 (MQ=255) gTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTACGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACt < 2:597758/143‑1 (MQ=255) ttCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGGTGAACTg > 1:597842/1‑143 (MQ=255) gatccgcgTCGGTACCGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAAc < 2:425068/139‑1 (MQ=255) ctCGGTAGCGGACGCATTCTGCCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAACGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAg < 2:31357/142‑1 (MQ=255) gTATCGGACTCACTCTGGCGATGGTGGAATCTCGTTACCCCAGCTTTAGCGTTAAGTGCCGTATCGGTGCTAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGt < 1:731750/143‑1 (MQ=255) tAACGCACGCATTCTGGCGAAGGTGGAATCGCGTAACCCCAGCGTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTa < 1:1045/143‑1 (MQ=255) cGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAGCCGACCAGCGGTGATa > 2:442536/1‑143 (MQ=255) ggACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGACAAGCGCGGCGTGCTGAAACCAGGCGCTGAACCATATGAACCCACCAGCGGGACTAc > 1:475224/1‑143 (MQ=255) cGCATTCTGGCGAAGGTGGACTCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTAATACCgg < 2:299177/143‑1 (MQ=255) gCATTCCAGAGAACGTGCAATCTCCTAACCGCATCTTCAGCGTTAAGTGCCTTATCGGTGCCAACATTATTTGAGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTAATACCggg < 2:99501/143‑1 (MQ=255) ttCTGGCGAAGGTGGAAGCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTAATACCGGGAtt < 1:422296/143‑1 (MQ=255) | CTCTGAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCATGAGTAAGATTTTTGAAGATAACTCGCTGACTATCGGTCACACGCCGCTGGTTCGCCTGAATCGCATCGGTAACGGACGCATTCTGGCGAAGGTGGAATCTCGTAACCCCAGCTTCAGCGTTAAGTGCCGTATCGGTGCCAACATGATTTGGGATGCCGAAAAGCGCGGCGTGCTGAAACCAGGCGTTGAACTGGTTGAACCGACCAGCGGTAATACCGGGATT > NC_000913/2532351‑2532631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |