New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2375822 =	10 (0.150)	58 (0.880)	49/274	0.3	85.7%	coding (139/963 nt)	menC	O‑succinylbenzoyl‑CoA synthase
	?	NC_000913	= 2515611	NA (NA)					intergenic (+170/+30)	insL1/yfeA	IS186 transposase/putative diguanylate cyclase

AGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGAC  >  NC_000913/2515483‑2515748                                                                                                                                 |                                                                                                                                            aGGTTGCCATTCGTGGGACAGGATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGCCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCg                                                                                                                               <  2:896124/143‑1 (MQ=255)     ggCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                                                                                                           <  2:603237/143‑1 (MQ=39)        cATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtctttt                                                                                                                        >  1:554494/1‑143 (MQ=38)          ttCGTGGGACAGTATCCCTGACAGCCTACACAGCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGGTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                                                                                                                      >  1:697305/1‑143 (MQ=255)           tCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTAc                                                                                                                     >  2:1089176/1‑143 (MQ=255)             ttGGGACAGCATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGc                                                                                                                   <  2:646511/142‑1 (MQ=255)               gggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCt                                                                                                                 <  2:202477/143‑1 (MQ=255)                ggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGACCATCCCCCTGTTTTTTTACGCGTg                                                                                                                >  1:1111968/1‑143 (MQ=11)                    aGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCCGTTaa                                                                                                            >  1:141386/1‑143 (MQ=255)                      tcccccTGACCGCCTTCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc                                                                                                          <  2:397142/140‑1 (MQ=255)                        tCCCTGACAGGCTAGAAAGCGCAATTGGAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg                                                                                                        <  2:404900/143‑1 (MQ=255)                        tCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg                                                                                                        <  1:240157/143‑1 (MQ=255)                         cccGGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc                                                                                                       <  1:8121/143‑1 (MQ=255)                           cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTa                                                                                                     <  1:231028/143‑1 (MQ=255)                            tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTaa                                                                                                    >  2:756319/1‑143 (MQ=255)                              aCAGCCTACAAGCCGCAACTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTCTACGCCTGTTAATCAGCTAATg                                                                                                  <  1:448904/143‑1 (MQ=255)                               cAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg                                                                                                 <  1:321311/143‑1 (MQ=255)                               cAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCCGTGAATCAGCTACTgg                                                                                                 >  1:298204/1‑143 (MQ=255)                                    tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGct                                                                                            >  1:298546/1‑142 (MQ=255)                                        aaaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCg                                                                                        >  1:501373/1‑143 (MQ=255)                                        aaaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTCTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCg                                                                                        >  1:499464/1‑143 (MQ=255)                                           cGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGAcc                                                                                     <  1:782870/143‑1 (MQ=255)                                                ttGTAGATCGTGTGGCATCGTCTTAACGAGGGTCCTAGGCGTCGCATTCTTCTGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCa                                                                                <  2:541806/143‑1 (MQ=21)                                                 tGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCaa                                                                               <  2:697305/143‑1 (MQ=255)                                                  gaagcaCGCGAGGCATCGTCTTAACGAGGCACCGCGGCGCGGCAGTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCaaa                                                                              <  1:216878/143‑1 (MQ=25)                                                   aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTACGTTAGCGCTTATGGGATAATTCCCCGGCTTTTTTACGCCTGTTCATCAGCTACTGCACGCGGGCGACCACTCCAAt                                                                             >  2:551133/1‑143 (MQ=17)                                                    agaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTAGCAAACTTCAGAGGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa                                                                            >  1:1128343/1‑143 (MQ=255)                                                     gaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc                                                                           >  1:128473/1‑143 (MQ=255)                                                     gaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGAGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc                                                                           >  2:1032580/1‑143 (MQ=255)                                                      aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTCATGGCTGCGTGCGCCCCATCAAATAcc                                                                          >  1:934811/1‑143 (MQ=255)                                                      aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAcc                                                                          >  2:989643/1‑143 (MQ=255)                                                       aCGCGAGGCATCGTCTTACCGAGGCACCGTGGCGTCGCATTCTCCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAccc                                                                         <  2:911413/143‑1 (MQ=255)                                                         gcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                                                       >  2:512518/1‑143 (MQ=255)                                                            aGGCATCGTCTTAACGATGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCa                                                                    <  1:990816/143‑1 (MQ=255)                                                              gCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCGATCAAATACCGTTGCAGa                                                                  >  1:406381/1‑143 (MQ=255)                                                              gCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAgg                                                                  >  1:1126861/1‑142 (MQ=255)                                                                gtCGTCCTAACCGGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTATGGTAGCGCTTCTGGGCGACTTCCCCGGTTCTGTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGata                                                                <  2:644134/142‑1 (MQ=25)                                                                 tCGTCTTAACGAGGCACCGATGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGCGATAATTCACCGCCTCTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGatat                                                               <  2:780185/143‑1 (MQ=25)                                                                 tCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGatat                                                               >  1:766623/1‑143 (MQ=255)                                                                    tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGGCCAATCAAATACCCTTGCAGATATTGc                                                            >  1:22329/1‑143 (MQ=255)                                                                    tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGAGATAAGGCCCAGGTTTTTTTACGCCTGTTAATCAGCTAATGTCTGCCGGCGACCACTCCAATGCCCTTGCATCTAttac                                                            >  2:224412/1‑141 (MQ=21)                                                                      ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATTTTacac                                                          >  1:72123/1‑143 (MQ=255)                                                                       tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAcc                                                         >  1:1105196/1‑143 (MQ=255)                                                                          cGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAccctc                                                      >  2:902171/1‑141 (MQ=255)                                                                             ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGc                                                   <  2:209730/143‑1 (MQ=255)                                                                              gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCt                                                  >  1:126213/1‑143 (MQ=255)                                                                                 ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTAt                                               <  1:428429/143‑1 (MQ=255)                                                                                  cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                                              <  1:1089176/143‑1 (MQ=255)                                                                                      gCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACTCCTGTTAATCTGCTAATGGCTGCGGGCGACCCTTCTAATCCCCTTGCAGATATTGCCCCCCGCGCTTATGCatt                                          >  2:315523/1‑141 (MQ=25)                                                                                       cGTTGCTTTCTTCATATCGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa                                         <  2:713082/143‑1 (MQ=255)                                                                                         tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGCGCTTATGCAATG‑‑gc                                     >  1:248206/1‑143 (MQ=255)                                                                                                cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCctgct                              <  2:1111968/143‑1 (MQ=255)                                                                                                  tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATTGCTGCGGGCGACTAATCCAATACCCTTTCGGATATTGCACCCCGGGCCTATGCAATA‑‑GCGCctgctgc                            >  2:1182283/1‑143 (MQ=38)                                                                                                  ccAGATGGGTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCctgctgc                            <  2:554494/142‑1 (MQ=255)                                                                                                      aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAAGCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCACTC‑‑GCGCCTGCTGCTGtt                        >  1:563651/1‑143 (MQ=255)                                                                                                             aaCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGtctc                 >  1:1144263/1‑143 (MQ=255)                                                                                                               cccTTAAGTTAGCGCTTATGGCATCATTCCCCGGTTTTTTTACGCCTGTTAGTCCGCTCACGCCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGa               <  2:135694/143‑1 (MQ=255)                                                                                                                ccTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTCATCAGCTAATGGCTTCGGGCGACCAATCAAATACCCTTGCAGATATTCGACCCCCGCCCTATGCCATT‑‑GCCCCTGCCGCTGTTCGCTCTCGAc              >  2:612181/1‑143 (MQ=255)                                                                                                                  ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCGAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCGGCTGTGGCGTCTCGACag            >  2:807966/1‑142 (MQ=255)                                                                                                                  ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGGTGCGTCTCGACag            >  1:880753/1‑142 (MQ=255)                                                                                                                     aGTTAGCGCTTGTGGGCTGATTCGCCGGTTTTTTTAAGACTGTTAATATGCTAGCGGCTCCGGGAGACCGATCAACTACCCTTGCAGATATTGCACCAAGTG‑TTA‑GCTTTAACGCGCCTGCTGCTGTTGCGTCTCGACAAACt         <  2:22329/143‑1 (MQ=255)                                                                                                                     aGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGACAAACt         <  2:128473/143‑1 (MQ=255)                                                                                                                      gTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGACAAACTc        >  1:338368/1‑143 (MQ=255)                                                                                                                          gcgcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑gcgc                                   <  2:685114/112‑1 (MQ=255)                                                                                                                          gcgcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑gcgc                                   >  1:685114/1‑112 (MQ=255)                                                                                                                          gcgcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGACAAACTCcgcg    >  2:800570/1‑143 (MQ=255)                                                                                                                            gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCTCCTGCTGCTGTTGCGTCTCGACAAGCTCCGCGAc  >  1:438266/1‑143 (MQ=255)                                                                                                                                 |                                                                                                                                            AGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATA‑‑GCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGAC  >  NC_000913/2515483‑2515748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.