New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1428264NA (NA)5 (0.190) 3/284 3.8 100% coding (463/981 nt) insH1 IS5 transposase and trans‑activator
?NC_000913 = 2066866 0 (0.000)coding (456/1017 nt) insH1 IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

GCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGC  >  NC_000913/1428126‑1428401
                                                                                                                                          |                                                                                                                                         
gCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTagag                                                                                                                                 <  2:397236/149‑1 (MQ=32)
               tggtgACCAGGCTGTGGGTCAGGCCACTCTTGTCATCGCCACCCATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGACCTGTGTTCTTGGTAGAGCTGGGTGCCTCAatg                                                                                                                  >  2:296307/1‑149 (MQ=11)
                  tgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCGGCTCTTTGTTCTGGGTAGAGCTGGGTGCCTCAatgatg                                                                                                               >  2:80939/1‑149 (MQ=17)
                                     gccccgctTGGCAGCGACACCAATGTGGGCCTTCATGCCAACGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGc                                                                                            <  2:366646/143‑1 (MQ=255)
                                       cACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCt                                                                                          <  1:158395/149‑1 (MQ=39)
                                        aCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCGCAGTGCCtt                                                                                         >  2:163548/1‑149 (MQ=255)
                                        aCTCTTGGCATCGACACCAATGTGGGCCTACATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCtt                                                                                         >  1:273028/1‑149 (MQ=38)
                                                 aTCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtcatca                                                                                <  1:402469/149‑1 (MQ=255)
                                                 aTCGACACCAAGGTGGGCCTTTCTACCAAATTGCCACTGATGGTCTTTCTTGGTCTGTTGCATCTCCGGATCCCGTTGCATTTCGTTGTCATTGGTAGACATGGGTGCCTCAATGATGGTGGCATCCACCAAAGAGACTAGGGtcatct                                                                                >  2:141694/1‑148 (MQ=9)
                                                   cGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCCACGTGCCTTGGGTCATCATg                                                                              >  2:57216/1‑149 (MQ=255)
                                                    gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTTGGTGCCTCAATGGTGGTGGCATCCCTCAAAGTGCCTTGGGTCATCATgg                                                                             >  1:225130/1‑148 (MQ=255)
                                                         cAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCAACCAAAGTGCCTTGGGTCATCATGACGccg                                                                        >  2:110242/1‑148 (MQ=38)
                                                                ggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg                                                                 >  1:268455/1‑149 (MQ=40)
                                                                    ttCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGAGGCGTCTCCGGATCGCGTTGCTGCTCTTTTTTCTTGGTAGAGCTGGGTGCCTCCATGATGGTGGCATCCACGAAAGCGCCTTGGGTCATCCTGACGCCTGCTTCGgccca                                                             >  2:14095/1‑147 (MQ=14)
                                                                     tCATGCCAAAGTGTCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGGGGCATCTACCAAAGTGCATTGGGTCATCATGACGCCTGCTTCGgccagc                                                            <  1:384088/149‑1 (MQ=255)
                                                                        tGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGccagccag                                                         >  2:410563/1‑149 (MQ=40)
                                                                          ccACAGTGCCACGGCTTGCCTTTCGTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCg                                                       <  1:4554/149‑1 (MQ=14)
                                                                          ccAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATGCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCg                                                       >  2:408307/1‑149 (MQ=255)
                                                                           cAAAGTGCCCCTGCTTGCCTTTCTTGGTCTGGTGCATCTCCGGCTCGCGTTGCTGCTCTTTGTTCTTGGGAGAGCGGGGTGCCGCAATGATGGTGGCATCCACCAAAGGTCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGa                                                      <  2:328004/149‑1 (MQ=14)
                                                                                      tGATTGCCTAGCTTGGTCAGATGCATCTCCTGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCtt                                           >  2:374405/1‑149 (MQ=255)
                                                                                          tGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAAc                                       <  2:243351/149‑1 (MQ=40)
                                                                                          tGCCTTTCTTGCTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAAc                                       <  2:364572/149‑1 (MQ=255)
                                                                                           gCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACa                                      <  1:330533/149‑1 (MQ=255)
                                                                                            ccTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGGCTTGAACaa                                     >  2:249966/1‑149 (MQ=255)
                                                                                              tttCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAAtt                                   >  1:224733/1‑149 (MQ=255)
                                                                                               ttctaagTCTGATGCAGCTCCTGATGGCGTGGCGTCTCTTTGTTCTGGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTg                                  >  2:442708/7‑149 (MQ=14)
                                                                                                tCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGa                                 >  2:34627/1‑149 (MQ=255)
                                                                                                   tGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACgg                              >  2:433672/1‑149 (MQ=255)
                                                                                                        tGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAg                         >  1:370093/1‑149 (MQ=255)
                                                                                                             cATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAt                    <  1:256748/149‑1 (MQ=255)
                                                                                                               tctcCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGGTGGTCTTGAACAATTGACGGGCCAGTTGAtga                  >  1:79361/1‑148 (MQ=255)
                                                                                                                 tcCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctg                >  1:302554/1‑149 (MQ=255)
                                                                                                                         gcgTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCGTCAGATCGCGTGCCTCGGCCAGACCGCGGCTGGTGGTCTTGAACAATTGACGGGCACGTTGATGCTGCTGGGGCa        >  2:112712/1‑149 (MQ=14)
                                                                                                                            ttGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAggc     >  2:138700/1‑148 (MQ=255)
                                                                                                                               ctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGc  >  1:89490/1‑149 (MQ=255)
                                                                                                                                          |                                                                                                                                         
GCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGC  >  NC_000913/1428126‑1428401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.