New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1396531 =	NA (NA)	5 (0.190)	3/284	3.8	NA	coding (456/1017 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913	= 1428264	NA (NA)					coding (463/981 nt)	insH1	IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

GCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGC  >  NC_000913/1428126‑1428401                                                                                                                                           |                                                                                                                                          gCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTagag                                                                                                                                 <  2:397236/149‑1 (MQ=32)                tggtgACCAGGCTGTGGGTCAGGCCACTCTTGTCATCGCCACCCATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGACCTGTGTTCTTGGTAGAGCTGGGTGCCTCAatg                                                                                                                  >  2:296307/1‑149 (MQ=11)                   tgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCGGCTCTTTGTTCTGGGTAGAGCTGGGTGCCTCAatgatg                                                                                                               >  2:80939/1‑149 (MQ=17)                                      gccccgctTGGCAGCGACACCAATGTGGGCCTTCATGCCAACGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGc                                                                                            <  2:366646/143‑1 (MQ=255)                                        cACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCt                                                                                          <  1:158395/149‑1 (MQ=39)                                         aCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCGCAGTGCCtt                                                                                         >  2:163548/1‑149 (MQ=255)                                         aCTCTTGGCATCGACACCAATGTGGGCCTACATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCtt                                                                                         >  1:273028/1‑149 (MQ=38)                                                  aTCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtcatca                                                                                <  1:402469/149‑1 (MQ=255)                                                  aTCGACACCAAGGTGGGCCTTTCTACCAAATTGCCACTGATGGTCTTTCTTGGTCTGTTGCATCTCCGGATCCCGTTGCATTTCGTTGTCATTGGTAGACATGGGTGCCTCAATGATGGTGGCATCCACCAAAGAGACTAGGGtcatct                                                                                >  2:141694/1‑148 (MQ=9)                                                    cGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCCACGTGCCTTGGGTCATCATg                                                                              >  2:57216/1‑149 (MQ=255)                                                     gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTTGGTGCCTCAATGGTGGTGGCATCCCTCAAAGTGCCTTGGGTCATCATgg                                                                             >  1:225130/1‑148 (MQ=255)                                                          cAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCAACCAAAGTGCCTTGGGTCATCATGACGccg                                                                        >  2:110242/1‑148 (MQ=38)                                                                 ggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg                                                                 >  1:268455/1‑149 (MQ=40)                                                                     ttCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGAGGCGTCTCCGGATCGCGTTGCTGCTCTTTTTTCTTGGTAGAGCTGGGTGCCTCCATGATGGTGGCATCCACGAAAGCGCCTTGGGTCATCCTGACGCCTGCTTCGgccca                                                             >  2:14095/1‑147 (MQ=14)                                                                      tCATGCCAAAGTGTCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGGGGCATCTACCAAAGTGCATTGGGTCATCATGACGCCTGCTTCGgccagc                                                            <  1:384088/149‑1 (MQ=255)                                                                         tGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGccagccag                                                         >  2:410563/1‑149 (MQ=40)                                                                           ccACAGTGCCACGGCTTGCCTTTCGTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCg                                                       <  1:4554/149‑1 (MQ=14)                                                                           ccAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATGCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCg                                                       >  2:408307/1‑149 (MQ=255)                                                                            cAAAGTGCCCCTGCTTGCCTTTCTTGGTCTGGTGCATCTCCGGCTCGCGTTGCTGCTCTTTGTTCTTGGGAGAGCGGGGTGCCGCAATGATGGTGGCATCCACCAAAGGTCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGa                                                      <  2:328004/149‑1 (MQ=14)                                                                                       tGATTGCCTAGCTTGGTCAGATGCATCTCCTGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCtt                                           >  2:374405/1‑149 (MQ=255)                                                                                           tGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAAc                                       <  2:243351/149‑1 (MQ=40)                                                                                           tGCCTTTCTTGCTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAAc                                       <  2:364572/149‑1 (MQ=255)                                                                                            gCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACa                                      <  1:330533/149‑1 (MQ=255)                                                                                             ccTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGGCTTGAACaa                                     >  2:249966/1‑149 (MQ=255)                                                                                               tttCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAAtt                                   >  1:224733/1‑149 (MQ=255)                                                                                                ttctaagTCTGATGCAGCTCCTGATGGCGTGGCGTCTCTTTGTTCTGGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTg                                  >  2:442708/7‑149 (MQ=14)                                                                                                 tCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGa                                 >  2:34627/1‑149 (MQ=255)                                                                                                    tGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACgg                              >  2:433672/1‑149 (MQ=255)                                                                                                         tGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAg                         >  1:370093/1‑149 (MQ=255)                                                                                                              cATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAt                    <  1:256748/149‑1 (MQ=255)                                                                                                                tctcCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGGTGGTCTTGAACAATTGACGGGCCAGTTGAtga                  >  1:79361/1‑148 (MQ=255)                                                                                                                  tcCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctg                >  1:302554/1‑149 (MQ=255)                                                                                                                          gcgTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCGTCAGATCGCGTGCCTCGGCCAGACCGCGGCTGGTGGTCTTGAACAATTGACGGGCACGTTGATGCTGCTGGGGCa        >  2:112712/1‑149 (MQ=14)                                                                                                                             ttGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAggc     >  2:138700/1‑148 (MQ=255)                                                                                                                                ctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGc  >  1:89490/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                          GCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGC  >  NC_000913/1428126‑1428401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.