New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290111	NA (NA)	3 (0.070)	3/276	NT	6.2%	intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
	?	NC_000913	3744030 =	45 (1.100)					coding (289/468 nt)	yiaL	DUF386 family protein

GCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAGCCTCTGAGATACGAAAAATTG  >  NC_000913/3743882‑3744177                                                                                                                                                     |                                                                                                                                                    gCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAGAGTCAGCGAATCACTAt                                                                                                                                                     >  1:96049/1‑149 (MQ=255) cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                                                                     <  1:188773‑M2/1‑1 (MQ=255)  gggacaagaaaatctcttttctggtctgacggcgcttaatgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                    <  1:565562‑M2/2‑1 (MQ=255)   ggacacgaatatctcttttctggtctgacggcgcgtactgctggattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgctctcttatcagggacttgttggcaccttctTTa                                                                                                                                                   <  2:412751‑M2/3‑1 (MQ=255)   ggacaagaaaatctcctgtctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                   <  2:215849‑M2/3‑1 (MQ=255)    gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatgactccaggtgacaaacatgatctcatattagggactggtttggaccttccTTag                                                                                                                                                  >  1:678540‑M2/146‑149 (MQ=255)    aaTTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTag                                                                                                                                                  >  1:402645/1‑149 (MQ=255)     acaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagcgacttgtccgcaccttccttact                                                                                                                                                 >  1:513778‑M2/145‑147 (MQ=255)      caagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTagag                                                                                                                                                >  2:642390‑M2/144‑149 (MQ=255)       aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatcccatatcagggagttcttcgcaccttacttagaca                                                                                                                                               >  2:220583‑M2/143‑147 (MQ=255)            aTTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAgcgc                                                                                                                                          >  2:621034/1‑149 (MQ=255)             gtgaaCCACACGCGAAGCGGTGGTAAACCAGCCGGAAGTGCATCGACGGTATATCGATATTCAGGTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCa                                                                                                                                         <  1:257471/146‑1 (MQ=255)                aaCCACTCGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAata                                                                                                                                      <  1:139451/149‑1 (MQ=255)                     cacGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATattatt                                                                                                                                 <  2:549357/149‑1 (MQ=255)                        gcgAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTAttttt                                                                                                                              <  1:626521/149‑1 (MQ=255)                        gcgAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTAttttt                                                                                                                              >  1:487338/1‑149 (MQ=255)                           aaGCGGTGGTAAACCGTCCGGAAGTGCAGCGGCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTAt                                                                                                                           <  1:224715/149‑1 (MQ=255)                            aGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATc                                                                                                                          <  1:226896/149‑1 (MQ=255)                             gCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCa                                                                                                                         <  1:683211/149‑1 (MQ=255)                             gCGGTGGGAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCa                                                                                                                         <  1:613606/149‑1 (MQ=255)                              cGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAACGCAATATTATTTTTTATCAc                                                                                                                        >  1:150597/1‑149 (MQ=255)                                gtggtAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGGGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGGCAGCGAATCACTCTTAGAGCGGCGCAATATTATTTTTTATCACgc                                                                                                                      >  2:20446/1‑148 (MQ=255)                                   gtAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGATCAGCGCAATATTATTTTTTATCACGACAg                                                                                                                   >  2:235657/1‑149 (MQ=255)                                   gtAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAg                                                                                                                   >  1:44090/1‑149 (MQ=255)                                     aaaCCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGAAAATAATAAAGTCAGCGAGTCCCTATTAGAGCAGCGCAGTATTATTTTTTATCTCGACAGTg                                                                                                                 >  2:694656/1‑149 (MQ=255)                                      aaCCGTCCGGAAGAGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACCGTGa                                                                                                                >  2:88279/1‑149 (MQ=255)                                        ccGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAAc                                                                                                              <  1:481938/149‑1 (MQ=255)                                                   tGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCAttt                                                                                                   >  1:232965/1‑149 (MQ=255)                                                    gCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTta                                                                                                  <  2:230812/149‑1 (MQ=255)                                                    gCATCGGCGGTATATCGATATTGAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTGTTAGGGCAGCGCAATCTTCTTTTTTATCACGACAGTGAAGATGAGTCGTTta                                                                                                  >  2:59288/1‑149 (MQ=255)                                                       tcgtcgGTATATCGATATTCAGTTTGTGGCGTGGGTCGATGAGAAAATCTGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAg                                                                                               >  2:430159/1‑149 (MQ=255)                                                       tcgtcgGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAg                                                                                               >  1:233300/1‑149 (MQ=255)                                                          tcgGTATATCGATAGTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGACATAATAAAGTCCGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGaga                                                                                            <  2:487677/149‑3 (MQ=255)                                                           cgGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAAt                                                                                           <  1:558920/149‑1 (MQ=255)                                                           cgGTAGATCGTTATGCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAAt                                                                                           <  1:54455/149‑1 (MQ=255)                                                              tacatCGACATTCAGGTGCTGGCGTTGGGCGAAAAAAAAATCGACATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTCAACATGAATCATTTATAGAAATGAt                                                                                        <  2:103905/146‑1 (MQ=255)                                                                tatCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGAGATATAGTTTTTTATCAAGACAGTGAACATGAATCATTTATAGAAATGATaa                                                                                      >  2:698584/1‑148 (MQ=255)                                                                  aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATCCCg                                                                                    >  1:289485‑M2/84‑149 (MQ=255)                                                                     atatTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTTTTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGc                                                                                 >  1:212645/1‑149 (MQ=255)                                                                         tCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCt                                                                             <  2:257619/149‑1 (MQ=255)                                                                         tCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCt                                                                             >  1:474866/1‑149 (MQ=255)                                                                         tCAGTTTCTGGCCTGGGGCCAAGAGAAAATCGGCATTGCTATTGCTACGGGAAATACTAAATTCAGCCAATCACTATTTGAGCAGCGCAATTTTCTTTTTCATCACTACAGTGAACATGAATCATTTATAGAATTGATACCGGGCAGCt                                                                             >  2:391919/1‑149 (MQ=255)                                                                             tttCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATACTAAAGGCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCATGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGc                                                                         >  1:325119/1‑149 (MQ=255)                                                                                 tGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAAtt                                                                     <  1:505900/149‑1 (MQ=255)                                                                                   gCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAAtttt                                                                   <  1:437695/149‑1 (MQ=255)                                                                                     gTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATtttct                                                                 <  1:207709/149‑1 (MQ=255)                                                                                       ggggCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATtttcttt                                                               <  2:376197/149‑1 (MQ=255)                                                                                                 gaAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTACGCAGGATg                                                     >  2:228370/1‑149 (MQ=255)                                                                                                     aTCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATGACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCCACGTAATTTTCTTTCCGCAGGATGTTCa                                                 <  1:547435/149‑1 (MQ=255)                                                                                                     aTCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCa                                                 >  1:595681/1‑149 (MQ=255)                                                                                                            gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCa                                          <  1:374210‑M2/108‑1 (MQ=255)                                                                                                                 atggATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTg                                     <  2:604565/146‑1 (MQ=255)                                                                                                                  ttGATACGGGAAATAAGAAAGCCAGCGAATCACTATTAGAGAAGCGGAAAATGATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGt                                    <  1:348589/149‑1 (MQ=255)                                                                                                                   tGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATTACGACAGTGAACATGAATCATTTATAGAAATGATACCGCGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGta                                   <  2:257920/149‑1 (MQ=255)                                                                                                                         gggAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACTTCAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGc                             >  2:234952/1‑149 (MQ=255)                                                                                                                                  ttaaGTCAGCGAATCACTATTAGAGCAGCGGAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAGCct                    <  2:525455/147‑1 (MQ=255)                                                                                                                                          gCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAGCCTCTGAGATa            >  1:463953/1‑149 (MQ=255)                                                                                                                                                   tATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAACCTCTGAGATACGAAAAAtt   >  2:187029/1‑149 (MQ=255)                                                                                                                                                    aTTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAGCCTCTGAGATACGAAAAATtg  >  1:13556/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAATAAAGTCAGCGAATCACTATTAGAGCAGCGCAATATTATTTTTTATCACGACAGTGAACATGAATCATTTATAGAAATGATACCGGGCAGCTACGCAATTTTCTTTCCGCAGGATGTTCACCGACCAGGTTGTATTATGCAAACAGCCTCTGAGATACGAAAAATTG  >  NC_000913/3743882‑3744177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.