| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 53 (1.890) | 21/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 117 total aligned reads displayed.
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 ATGATGAACCCTGTTCTATGGCTCCAGATTACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:945335/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2346502/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:667756/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1660531/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1656417/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2588888/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1970634/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2565328/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1527767/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:806824/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:215946/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:403019/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:519388/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTAATATCAGGGACTTGTTCGCACCTTCCT > 1:503645/1‑71 TGATGAACCCTGTTCTATGGCTCCAGGTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1570822/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1446690/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:773583/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:555165/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:23452/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:115231/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1600985/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1551336/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2032863/70‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTGCGCACCTTCCT < 1:295644/70‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2490227/1‑69 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:449710/1‑69 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:217145/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:895156/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1702347/1‑68 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1311063/1‑68 ATGAACCCTCTTCTATGGCTACAGATGACAAACATGATCTCATATCAGGGACTTGTACGCACCTTCCTTA > 1:1879518/1‑70 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2415057/1‑70 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:205589/70‑1 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:2269845/1‑71 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:1618844/1‑71 CCCTGTTCTATGGCTCCATATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1958033/66‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:618550/1‑71 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA < 1:1574272/71‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA < 1:656835/71‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1728946/63‑1 CCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:34414/49‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:2068838/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:198294/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:1864129/71‑1 AGATGACAAACATGATCTCATATCATGGACTTGTTCGCACCTTCCTT < 1:326369/47‑1 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:363550/47‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATG < 1:550978/56‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATG < 1:1736174/56‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1460060/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:915598/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:447841/44‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:625351/44‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:50858/44‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2012733/44‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATT > 1:420581/1‑71 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:952885/1‑44 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:1561486/1‑44 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:185507/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:1057839/1‑50 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:1284100/1‑50 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:2596171/1‑50 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:735648/1‑50 ACAAACATGATCTCATATCAGGGA‑‑‑GTTCGCACCTTCCTTAGTACTGA > 1:1447698/1‑47 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1232744/41‑1 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1910257/41‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:1704302/1‑44 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCAC < 1:1482273/71‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCAC < 1:1319505/71‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCAC < 1:1996352/71‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1779658/1‑67 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2025370/1‑67 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1084078/1‑67 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTG > 1:1294563/1‑71 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT < 1:2357872/71‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT < 1:792105/71‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT < 1:1283836/71‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:755808/36‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1351089/36‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2195815/36‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1151242/36‑1 TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT > 1:572725/1‑70 ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:1458063/70‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:627714/60‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA > 1:2564401/1‑71 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATT < 1:2298706/44‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATT < 1:282158/44‑1 TTGTTCGCACCTTCCTTAGTACTGAAGCAGCTACAGCAGAAATT < 1:1063817/44‑1 TGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:472944/1‑41 TGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:760606/1‑41 TGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2610594/1‑41 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCT > 1:2537706/1‑71 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCT > 1:2416894/1‑71 TTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCT > 1:2413705/1‑71 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA < 1:2665945/54‑1 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTT < 1:2248971/50‑1 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:301936/1‑37 TTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:2194542/1‑37 TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAA > 1:662381/1‑71 TCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATC > 1:879491/1‑53 CCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > 1:2646854/1‑71 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |