| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 39 (1.390) | 15/100 | NT | 95.1% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 2 (0.070) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC < W3110S.gb/3748807‑3748740 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:463055/1‑71 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:1844404/1‑71 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:1911457/1‑71 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:2528808/1‑71 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:2580554/70‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:32647/71‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:2078404/70‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:2022976/71‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:1529105/71‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA < 1:2017249/71‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:334988/70‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:338975/70‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT > 1:1117280/1‑71 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT > 1:1010293/1‑71 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:296158/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:943395/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:1868123/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:1467987/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:1443042/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGA > 1:1048004/1‑64 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG > 1:2636557/1‑63 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2423384/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1564704/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1476827/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1952242/71‑1 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:668349/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:135654/67‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2270758/67‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1455488/67‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:865938/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA > 1:709043/1‑70 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:1385237/1‑71 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1099222/63‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:180919/58‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:1771720/55‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:1396837/1‑70 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:1025321/1‑70 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:2387682/1‑54 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:862328/1‑54 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:2225690/1‑50 ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:514523/44‑1 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCTAGTTTTAACACCAT < 1:2325509/71‑1 TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAT > 1:2582358/1‑70 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAAC < 1:462513/63‑1 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:594830/1‑39 GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAA < 1:1287843/70‑1 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTT < 1:2007340/69‑1 ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC > 1:1304187/1‑71 ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:1120728/47‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412156‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC < W3110S.gb/3748807‑3748740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |