| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 974,262:1 | +C | 62.0% | intergenic (+14/+978) | lsrB → / ← ydeH | AI2 transporter/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 974,262 | 1 | . | C | 62.0% | 103.3 / 63.6 | 50 | intergenic (+14/+978) | lsrB/ydeH | AI2 transporter/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (11/8); new base C (20/11); total (31/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 | |||||||||||
CTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCTTCGTTTAGGTTA > Exported/974192‑974331 | cTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTaa > 1:1987681/1‑71 (MQ=255) ttACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑c < 1:1463969/69‑1 (MQ=255) tACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑ccg > 1:4434192/1‑68 (MQ=255) tACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑Cgg < 1:1397071/70‑1 (MQ=255) aCCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑ccg > 1:1866785/1‑67 (MQ=255) aGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAg > 1:2233049/1‑71 (MQ=255) aGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGt < 1:5478875/71‑1 (MQ=255) gcgcGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGt < 1:4847093/71‑1 (MQ=255) gcgcGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGt < 1:5131252/71‑1 (MQ=255) gcgcGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGt < 1:1798184/71‑1 (MQ=255) cgcgTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTa < 1:4265872/71‑1 (MQ=255) cgTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa < 1:691835/70‑1 (MQ=255) gATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATgg > 1:3431385/1‑69 (MQ=255) atatTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATgg > 1:5247865/1‑69 (MQ=255) atatTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATgg > 1:1231815/1‑69 (MQ=255) atTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATgg > 1:5595656/1‑67 (MQ=255) atTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTa > 1:1181174/1‑63 (MQ=255) atTCAACAAAGAGAATATCGGCAAATACGATATCTGATGTGCATTACTTAACCGGAGTAAGTTATgg > 1:4075056/1‑67 (MQ=255) ttCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgat > 1:5347349/1‑71 (MQ=255) ttCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgat > 1:3176052/1‑71 (MQ=255) tCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCTGAGTAAGTTATGGCAgatt > 1:3805578/1‑70 (MQ=255) caacaaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAgatgat > 1:591425/1‑71 (MQ=255) aacaaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgattta < 1:3658627/71‑4 (MQ=255) aacaaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgattta < 1:1515605/71‑4 (MQ=255) acaaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:2978942/1‑59 (MQ=255) acaaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑cc > 1:4158322/1‑47 (MQ=255) caaAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGt < 1:3068304/56‑1 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:149690/1‑56 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGGAgatt < 1:2215434/65‑2 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgatt < 1:3430182/65‑2 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgatt < 1:1871171/65‑2 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGt < 1:1128438/53‑1 (MQ=255) aaGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATgg < 1:1567293/58‑1 (MQ=255) agagAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAg > 1:4754353/1‑70 (MQ=255) gaATATCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATGGCAgatt < 1:5164537/61‑2 (MQ=255) aaTATCGGCAAATACGATTTCTGATGTGCATTACTTaa > 1:3200052/1‑38 (MQ=255) aaTATCGGCAAATACGATTTCTGATGTGCATTACTTaa > 1:5411579/1‑38 (MQ=255) atatCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATg > 1:1380248/1‑52 (MQ=255) tCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:155168/1‑47 (MQ=255) tCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:5371117/1‑47 (MQ=255) tCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:2303256/1‑47 (MQ=255) tCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:2463338/1‑47 (MQ=255) tCGGCAAATACGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:4425393/1‑47 (MQ=255) cGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTAt > 1:2413304/1‑46 (MQ=255) cGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTAt > 1:555413/1‑46 (MQ=255) cGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTAt > 1:2612220/1‑46 (MQ=255) cGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTAt > 1:3935288/1‑46 (MQ=255) cGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:1416214/1‑37 (MQ=38) cGATTTCTGATGTGCATTACTTAACCGGAGTAAGTTa > 1:3701417/1‑37 (MQ=38) gATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATg > 1:951275/1‑38 (MQ=37) gATTTCTGATGTGCATTACTTAACCGGAGTAAGTTATg > 1:1728679/1‑38 (MQ=37) gATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTa < 1:5613460/71‑1 (MQ=255) tGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAg > 1:5099383/1‑71 (MQ=255) aTGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGcc < 1:2479501/71‑1 (MQ=255) gtgCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCtt > 1:724949/1‑71 (MQ=255) aTTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCTTCGtt < 1:1120900/71‑1 (MQ=255) ttACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCTTCGtt > 1:284610/1‑70 (MQ=255) a‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCTTCGTTTAGGTTa < 1:712448/70‑1 (MQ=255) | CTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCATTACTTAA‑CGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAATTCAGCCTTCGTTTAGGTTA > Exported/974192‑974331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |