| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,816,759:1 | +G | 48.1% | coding (417/441 nt) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,816,759 | 1 | . | G | 48.1% | 38.1 / 68.2 | 27 | coding (417/441 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| Reads supporting (aligned to +/- strand): ref base . (11/3); new base G (7/6); total (18/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
GACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAA > Exported/2816691‑2816828 | gACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa‑ga < 1:633351/71‑1 (MQ=255) tGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaaga < 1:3084124/71‑1 (MQ=255) aTTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAgg > 1:1235420/1‑70 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa‑ga > 1:2469353/1‑61 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAgaagaa > 1:3360926/1‑68 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGt < 1:3301379/71‑1 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGt < 1:330405/71‑1 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGt < 1:114862/71‑1 (MQ=255) ttGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGt < 1:4163965/71‑1 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCg > 1:2987377/1‑71 (MQ=255) gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCgg > 1:3159841/1‑70 (MQ=255) gtgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGgc > 1:3133796/1‑71 (MQ=255) ggCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa < 1:1357467/51‑1 (MQ=255) cTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCAc > 1:1460765/1‑71 (MQ=255) cTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCAc > 1:2044613/1‑71 (MQ=255) tCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa‑gga > 1:2078559/1‑43 (MQ=255) tCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGc > 1:5490880/1‑70 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa‑ga > 1:5518853/1‑43 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTa‑ga > 1:1083296/1‑43 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAgg > 1:872420/1‑51 (MQ=255) cgcgCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAgg > 1:1182128/1‑51 (MQ=255) cAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCAc < 1:399633/59‑1 (MQ=255) aGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAAt > 1:1961746/1‑71 (MQ=255) aTTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCATTGt < 1:2844756/69‑1 (MQ=255) tGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTAcc > 1:3681458/1‑44 (MQ=255) gCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAgtg > 1:2026325/1‑69 (MQ=255) cGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTa < 1:3984659/70‑1 (MQ=255) gTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAgg < 1:4382118/71‑1 (MQ=255) tAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGt > 1:1017079/1‑71 (MQ=255) aaCCCGGGCGACCGCTTAGGAGAAGAAGCTACCGgcgc > 1:3559808/1‑38 (MQ=25) aaCCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGt > 1:2020063/1‑70 (MQ=255) ttA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTg > 1:166431/1‑70 (MQ=255) ttA‑GAGAAGAAGGTACCGGCGCACTAGGGGAGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTg > 1:1358416/1‑70 (MQ=255) a‑gagAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGa > 1:1012375/1‑43 (MQ=255) a‑gagAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGaa < 1:146302/70‑1 (MQ=255) a‑gagAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGa < 1:1139932/69‑1 (MQ=255) | GACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTA‑GAGAAGAAGGTACCGGCGCACTAGGGGCGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAA > Exported/2816691‑2816828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |