New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 560034 (0.550)28 (0.610)
+ACGCTGCGATTT		 5/74 NT 48.6% intergenic (+70/+83) yaaX/yaaA hypothetical protein/conserved hypothetical protein
?Exported 2636227 = 45 (0.730)intergenic (+47/‑51) ugpB/ugpA glycerol‑3‑phosphate transporter subunit/glycerol‑3‑phosphate transporter subunit

ACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/5548‑5600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGT  >  Exported/2636227‑2636261
                                                     ||||||||||||                                   
cgcATCCGGTATGTAACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGG                               >  1:5540228/4‑71
      CGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGAT                         <  1:3323539/71‑1
       GGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGAT                         >  1:3154301/1‑70
         CATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAG                      <  1:577759/71‑1
           TTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGC                     >  1:264260/1‑70
           TTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGG                           >  1:5316084/1‑64
              aaCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAG                 >  1:2528465/3‑71
               aCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTG                                   <  1:1843152/51‑1
               aCGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAG                 <  1:1266928/69‑1
                 GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGC              <  1:270646/71‑1
                 GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCG               >  1:5269286/1‑70
                 GCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGC              <  1:4307580/71‑1
                  CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCA             <  1:1028253/71‑1
                   CTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCA             <  1:3871861/70‑1
                    TGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATC           >  1:4757524/1‑71
                    TGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGG                           <  1:2817629/55‑1
                     GATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCA             >  1:3802728/1‑68
                       TGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAG                                >  1:1451296/1‑47
                       TGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAG                                >  1:1294376/1‑47
                        GCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGG        >  1:1124834/1‑70
                         CGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA      >  1:5385333/1‑71
                          GACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCAt     <  1:3170691/71‑2
                          GACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCAt     <  1:3128084/71‑2
                             GCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACg    >  1:781071/1‑68
                              CTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACg    <  1:4337157/68‑2
                              CTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTA                                 >  1:3077778/1‑39
                              CTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTA                                 >  1:297465/1‑39
                                      TCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGTAAAGCGCATCCGG        <  1:239818/56‑1
                                        TTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACgaa  >  1:3674019/1‑57
                                        TTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACgaa  >  1:3667330/1‑57
                                        TTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACgaa  >  1:275120/1‑57
                                          ATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGG        >  1:3957820/1‑52
                                          ATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGG        >  1:182445/1‑52
                                                    CACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGG        <  1:3349995/42‑1
                                                    CACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGG        <  1:5572349/42‑1
                                                     ||||||||||||                                   
ACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/5548‑5600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGT  >  Exported/2636227‑2636261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.