| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 18241 | 79 (1.290) | 20 (0.340) +CG |
6/94 | NT | 27.9% | intergenic (+80/+252) | nhaR/rpsT | DNA‑binding transcriptional activator/30S ribosomal subunit protein S20 |
| ? | Exported | 474199 = | 29 (0.470) | coding (1761/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzyme IIABC components | |||||
TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/18187‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATTGTCGGTGCGATGAATATCG > Exported/474199‑474221 || TGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGA > 1:5010402/1‑71TGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACACGTATTGTCCATGCGA > 1:5244862/1‑71 GAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATG < 1:2711398/71‑1 agaACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGA < 1:4804581/68‑1 gaACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTA > 1:805710/3‑55 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATAa < 1:5249368/71‑2 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATA < 1:4495907/68‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATA < 1:4058703/68‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCc > 1:1351561/1‑54 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCc > 1:435102/1‑54 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATAaag > 1:5173619/1‑67 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATAaag > 1:1817938/1‑67 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATT > 1:4546250/1‑51 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTA > 1:2101979/1‑49 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTC < 1:4252800/43‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTC < 1:3426143/43‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTC < 1:1067901/43‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTC < 1:972960/43‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTC < 1:3585881/42‑1 ATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGAT < 1:4546693/40‑1 ATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGAT < 1:2512573/40‑1 TAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATA < 1:291866/40‑1 GTTGGCAGCATCACCCGTATTGTCCATGCGATGAAT > 1:784481/1‑36 || TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/18187‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATTGTCGGTGCGATGAATATCG > Exported/474199‑474221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |