| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 18241 | 79 (1.290) | 61 (0.990) | 32/98 | NT | 54.2% | intergenic (+80/+252) | nhaR/rpsT | DNA‑binding transcriptional activator/30S ribosomal subunit protein S20 |
| ? | Exported | 1502766 = | 24 (0.390) | intergenic (‑139/‑781) | lrhA/yfbQ | DNA‑binding transcriptional repressor/predicted aminotransferase | |||||
GTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/18185‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > Exported/1502766‑1502833 acTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCA < 1:5137758/69‑1acTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCA > 1:2263577/3‑71 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA < 1:2093994/59‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA < 1:2905206/59‑1 GGAGCACCTCAAAAACACCATCATACTCTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT > 1:4556855/1‑71 GAGCACCTCAAAAACACCATCATACACTAACTCAGTAAGTTGGCAGCATCCCCAAAAAAGCGACTCACA < 1:4669689/69‑1 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACA < 1:5532234/69‑1 CTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCC > 1:4277504/1‑70 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCA < 1:3718766/61‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACT < 1:3228658/59‑1 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:4669084/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:476015/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:2571641/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:5162022/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:4978695/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAAt > 1:1108891/2‑49 tAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAA > 1:4644038/2‑49 CAAAAACACCATCATACGCTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGT > 1:1127131/1‑70 AAAAACACCATCATACACTAAATCAGTAAGTTGGCATCATCACCAAAA < 1:4236710/48‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTT < 1:26482/70‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT < 1:1759859/61‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGA > 1:3784224/1‑54 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGA > 1:3664927/1‑54 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAA < 1:1868028/49‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA < 1:532723/48‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA > 1:832507/1‑48 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA > 1:4476378/1‑48 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAA < 1:1598350/48‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTAT < 1:283277/71‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTAT > 1:5568600/1‑70 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAA < 1:2739244/47‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:4247412/1‑71 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:758001/1‑71 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:1924389/1‑71 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:2847860/1‑71 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAT < 1:4098308/71‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAT < 1:4269169/71‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGC > 1:1289228/1‑48 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGC > 1:3693579/1‑48 ACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAA > 1:2533932/1‑42 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTAT < 1:3977412/64‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT < 1:4545836/52‑1 aCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGATATAATa > 1:4486248/2‑65 TCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT < 1:3521058/51‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT < 1:259661/51‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACT > 1:5540334/1‑45 ATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCAAC < 1:4599909/43‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCt < 1:3979226/45‑2 TACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGC < 1:2544036/39‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAG > 1:4977797/1‑69 CACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTA < 1:2152608/70‑1 CTAAATCAGTATGTTGGCAGCATCACCAAAAAAGCGAC < 1:3733479/38‑1 AAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCA > 1:5150655/1‑71 AAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:1106823/1‑55 AAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCA < 1:5675822/39‑1 AATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCA < 1:5482672/70‑1 ATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTTTAATGCCTG < 1:5179219/59‑1 ATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTG < 1:809700/59‑1 ATCAGTAAGTGGGCAGCATCACCAAAAAAGCGACTCACAT < 1:1350231/40‑1 CAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAG > 1:5692829/1‑70 CAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAG > 1:3568152/1‑70 AGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATA < 1:2239879/71‑1 AGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATA < 1:2765492/71‑1 AGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATA > 1:5534736/1‑71 AGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATA > 1:442359/1‑71 AGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATAT < 1:1391626/70‑1 GTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:3358923/1‑45 GTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:4316766/1‑45 TGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTAT < 1:2320338/41‑1 GGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAG > 1:4091664/1‑61 GCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAA > 1:1078395/1‑41 CAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCA < 1:5058608/71‑1 CAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCA < 1:3655362/71‑1 CAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCA < 1:2688104/71‑1 GCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGG > 1:1392882/1‑71 CATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTT < 1:1282341/66‑1 ATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTA < 1:1169741/47‑1 ATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAT < 1:2598169/37‑1 CACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTT < 1:5023204/63‑1 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > 1:842760/1‑71 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > 1:4296075/1‑71 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > 1:707061/1‑71 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGG > 1:2018957/1‑66 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA > 1:3518239/1‑54 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA > 1:3622903/1‑54 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA > 1:1954871/1‑54 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA > 1:410064/1‑54 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTG < 1:3504940/39‑1 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCC > 1:336880/1‑37 CAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGA < 1:3153955/51‑1 GTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/18185‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > Exported/1502766‑1502833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |