| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 223037 | 66 (1.080) | 31 (0.760) +TAGCACTGCCACGTAT |
11/66 | NT | 50.0% | intergenic (+92/‑88) | lpcA/prfH | D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor |
| ? | Exported | 1019195 = | 27 (0.440) | intergenic (+144/+82) | ydgA/uidC | conserved hypothetical protein/predicted outer membrane porin protein | |||||
CTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/222996‑223037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCA > Exported/1019195‑1019234 |||||||||||||||| cctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTT < 1:1427658/58‑1 ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC < 1:4228679/69‑1 ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC < 1:1437379/69‑1 ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTA > 1:314186/3‑62 ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTA > 1:875263/3‑62 tATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCC > 1:1004805/2‑71 tATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCC > 1:2101907/2‑71 tATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCC > 1:1903227/2‑71 ATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC > 1:2946535/1‑69 ATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC > 1:1415165/1‑69 GCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTAT < 1:2568832/53‑1 GATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTT < 1:5660260/52‑1 GATGCGACGCTGAAGCGTCTTATCAAGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATA > 1:818729/1‑70 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAA < 1:713490/70‑1 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCAC > 1:4033205/1‑38 TGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAA < 1:4048171/69‑1 TGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAA < 1:2048094/69‑1 TGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAA < 1:2484138/69‑1 CGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAc < 1:274881/71‑2 GACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAca > 1:1857692/1‑69 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAcac < 1:2096420/71‑4 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA < 1:1281470/68‑1 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA < 1:3098024/68‑1 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATG < 1:769342/44‑1 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATG < 1:1429198/44‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCG < 1:4858968/71‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCG < 1:3770558/71‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:1279892/63‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:2391419/63‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTA < 1:433358/45‑1 CTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTA < 1:5457551/45‑1 aaGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCAC > 1:774384/3‑71 aaGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCA < 1:4692444/68‑1 aGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCAC < 1:3150977/69‑1 GCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTT > 1:1562269/1‑71 TCTTATCATGCCTACATAGCACTGCCACGTATGTTTTCACCGCATCCGGCATAt < 1:208239/54‑2 TCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:1078565/55‑1 TCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:5660959/55‑1 CTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTTTG > 1:4855398/1‑69 TTATCATGCCTACATAGCACTGCCACGTATGTTTACa > 1:4214843/1‑36 TTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTTTGcta > 1:5651377/1‑68 CATAGCACTGCAACGTATGTTTACACCGCATCCGGCATAAAAAca > 1:194876/1‑43 ATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:5174100/40‑1 ATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:1356576/40‑1 TAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA > 1:4103816/1‑41 AGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA > 1:462448/1‑40 AGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA > 1:1712395/1‑40 AGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA > 1:781077/1‑40 AGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAA > 1:1438687/1‑40 GCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAca > 1:2988740/1‑39 GCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAca > 1:1837029/1‑39 CTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTTTGc < 1:2442155/50‑2 |||||||||||||||| CTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/222996‑223037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCA > Exported/1019195‑1019234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |