| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 379522 | 12 (0.200) | 17 (0.400) +AAGTGCGCTTTGTTT |
5/68 | NT | 49.7% | intergenic (‑115/‑260) | fepB/entC | iron‑enterobactin transporter subunit/isochorismate synthase 1 |
| ? | Exported | = 1444537 | 38 (0.620) | intergenic (+158/+42) | rcsB/rcsC | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
CCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/379476‑379522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCTAC < Exported/1444537‑1444500 ||||||||||||||| CCCTCGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGC > 1:1143562/1‑67 CGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTA > 1:4935384/1‑60 CGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTA > 1:4537736/1‑60 GGAGAGGGTTAGGGTGAGGGGAACAGACAAGCAAAGTGCGCTTTGTT < 1:817756/47‑1 GAGAGGGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGT > 1:3878065/1‑71 GGTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTT < 1:4189880/41‑1 GTTAGGGTGAGGGGAACAGCCCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:882915/1‑60 GTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATC < 1:5382962/71‑1 GTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:442425/1‑60 GTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:5184732/1‑60 GTTAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:449163/1‑60 TAGGGTGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTG > 1:504188/1‑71 TGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATC < 1:2944624/64‑1 TGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATC < 1:569061/64‑1 TGAGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGA > 1:814046/1‑42 AGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCTAC < 1:5409936/70‑1 AGGGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCTAC < 1:1503857/70‑1 GGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCA < 1:3292134/36‑1 GGGAACAGACCAGCAAAGTGCGCTTTGTTTATGCCA < 1:840549/36‑1 gaCCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:2948275/3‑42 gaCCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:2135539/3‑42 gaCCAGCAAAGTGCGCTTTGTTTATGCCAGATGCGACGCTGA > 1:1808865/3‑42 TGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTTATCTGG < 1:2478761/45‑1 TGCGCTTTGTTTATGCCAGATGCGACGCTGACGCGTCTT < 1:2122909/39‑1 GTTTATGCCAGATGCGACGCTGACGCGTCTTAGCTG > 1:2820159/1‑36 ||||||||||||||| CCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/379476‑379522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCCAGATGCGACGCTGACGCGTCTTATCTGGCCTAC < Exported/1444537‑1444500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |