| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1032435 = | 91 (1.480) | 14 (0.300) +TTTCATTTAATT |
9/74 | NT | 26.4% | intergenic (+68/‑205) | blr/ydgT | beta‑lactam resistance membrane protein/predicted regulator |
| ? | Exported | 2331379 = | 13 (0.210) | intergenic (‑284/+146) | sodA/fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein | |||||
CAAGATAATAAATTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1032451‑1032435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGC > Exported/2331379‑2331443 |||||||||||| gAAGATAATAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGA < 1:2799766/57‑1 AAGATAATAAATTCCTTTTCATTTAATTGCCTTAT < 1:212814/35‑1 GATAATAAATTCCTTTTCATTTAATTGCCTTATAAATATA > 1:2871716/1‑40 GATAATAAATTCCTTTTCATTTAATTGCCTTATAAATATA > 1:2869360/1‑40 ATAATAAATTCCTTTTCATTTAATTGCCTTATAAATAT > 1:997944/1‑38 ATAATAAATTCCTTTTCATTTAATTGCCTTATAAATAT > 1:2657724/1‑38 AATAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAAT < 1:1952751/63‑1 AATAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAA > 1:2449052/1‑61 ATAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGA < 1:3089464/71‑1 TAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:2912150/71‑1 TAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:5047823/71‑1 TAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAA > 1:3637616/1‑67 TAAATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAA > 1:991937/1‑67 AATTCCTTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAA > 1:4206228/1‑71 TTTTCATTTAATTGCCTTATAAATATATAGATAAGAGAGTG < 1:4838721/41‑1 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTA > 1:3996636/1‑70 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTA > 1:4421027/1‑70 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTA > 1:4461156/1‑70 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAA > 1:218657/1‑61 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:245236/60‑1 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:4527770/60‑1 TCATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:3003371/60‑1 CATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACA > 1:3988647/1‑71 ATTTAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAA < 1:926901/53‑1 TAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCA > 1:3702474/1‑62 TAATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAA < 1:4043226/55‑1 AATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAA < 1:5583209/49‑1 ATTGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGC < 1:737917/68‑1 |||||||||||| CAAGATAATAAATTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1032451‑1032435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGC > Exported/2331379‑2331443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |