| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1417821 | 20 (0.330) | 21 (0.370) +TCAG |
11/90 | NT | 38.9% | intergenic (+102/‑231) | proL/narP | tRNA‑Pro/DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| ? | Exported | 2713590 = | 52 (0.850) | coding (771/2544 nt) | nirB | nitrite reductase, large subunit, NAD(P)H‑binding | |||||
TTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1417756‑1417821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGTCCAGACCACACTG > Exported/2713590‑2713607 |||| TTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAG < 1:4676669/70‑1TTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAG > 1:2496168/1‑70TTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAG < 1:4142999/70‑1 TATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTC < 1:5638077/70‑1 ATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTC < 1:4456886/69‑1 TGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGAC > 1:2516611/1‑71 AATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACc > 1:2040293/1‑69 AATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACc > 1:2147127/1‑69 ATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACcc < 1:3720370/70‑3 ATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCAC < 1:2748099/61‑1 AACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAG < 1:3588710/44‑1 CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGAC < 1:2816888/48‑1 CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGAC < 1:5693106/48‑1 CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAG < 1:5686206/37‑1 TGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCA > 1:1944238/1‑48 ACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCAC > 1:4335409/1‑45 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACc > 1:177685/1‑45 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACc > 1:4603690/1‑45 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGA < 1:876423/39‑1 TCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACA < 1:3358197/43‑1 TCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACA < 1:3159619/43‑1 CACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACAC > 1:4676462/1‑43 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACc > 1:5361505/1‑42 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACA > 1:141749/1‑41 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGA > 1:4684939/1‑36 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGA > 1:5485718/1‑36 |||| TTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1417756‑1417821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGTCCAGACCACACTG > Exported/2713590‑2713607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |