| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1885553 = | 65 (1.060) | 3 (0.060) | 3/84 | NT | 5.6% | coding (1015/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | Exported | 1885574 = | 45 (0.860) | coding (1036/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
ATACTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1885629‑1885553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattattAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCAC > Exported/1885574‑1885640 ATACTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAA < 1:3016760/71‑1 CTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT > 1:664128/1‑70 CTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT < 1:2516145/70‑1 CTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT > 1:2799240/1‑70 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT > 1:1178986/1‑71 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT > 1:4054848/1‑71 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT > 1:1612371/1‑71 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT > 1:2231590/1‑71 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT > 1:2631689/1‑71 TCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTAT > 1:3831954/1‑70 CCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT < 1:2110241/70‑1 CCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT < 1:2626944/70‑1 CAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTAT < 1:4517763/68‑1 CAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTAT < 1:4674857/68‑1 AATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT > 1:3094172/1‑62 TTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT < 1:4382054/47‑1 TTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT < 1:1961010/47‑1 TCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAAT < 1:719981/46‑1 TCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTAT > 1:3583063/1‑42 AAGTCGAGAACATCATTAATAATTGCCAGCAAATT < 1:3343782/35‑1 AAGTCGAGAACATCATTAATAATTGCCAGCAAATT < 1:4726061/35‑1 AAGTCGAGAACATCATTAATAATTGCCAGCAAATT < 1:1184385/35‑1 AAGTCGAGAACATCATTAATAATTGCCAGCAAATT < 1:1039346/35‑1 AATAATTGCCAGCAAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGG > 1:3136836/1‑70 TTGCCAGCAAATTATTAATGATGTTCTCGACTTCTCGAAACTGGA > 1:4167224/1‑45 GCCAGCAAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCT > 1:5219515/1‑55 AATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCC > 1:1905184/1‑71 AATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCC > 1:3292352/1‑71 AATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCC > 1:4051856/1‑71 AATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCC > 1:1277586/1‑71 TTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATT > 1:5237030/1‑50 TTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATT > 1:880194/1‑50 TTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATT > 1:4498077/1‑50 TTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTA < 1:3021206/42‑1 TTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGAAGGTAAGCTGATT > 1:3327166/1‑50 ATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCAC < 1:4273158/70‑1 ATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCAC > 1:336150/1‑70 ATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCAC < 1:1292145/70‑1 ATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTA > 1:1868080/1‑58 ATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGT > 1:4106766/1‑39 ATTAATCATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCC > 1:10706/1‑62 ATACTTTCCAGAATCAGCTTACCTGCTTCCAGTTTCGAGAAGTCGAGAACATCATTAATAATTGCCAGCAAATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1885629‑1885553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattattAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGAAAGTATTCCATTCCCAC > Exported/1885574‑1885640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |