| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2303886 | 49 (0.800) | 24 (0.570) | 9/68 | NT | 35.9% | intergenic (+59/‑125) | metJ/yiiX | DNA‑binding transcriptional repressor, S‑adenosylmethionine‑binding/predicted peptidoglycan peptidase |
| ? | Exported | 2925754 = | 52 (1.230) | intergenic (‑90/+70) | holC/pepA | DNA polymerase III, chi subunit/aminopeptidase A, a cyteinylglycinase | |||||
TAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2303803‑2303886‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatcaggcctacgAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAAT > Exported/2925754‑2925824 TAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCT > 1:2036374/1‑71TAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCT > 1:1229701/1‑71 AACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCT > 1:5656704/1‑70 ACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTA > 1:3037683/1‑71 ACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTT < 1:4297467/70‑1 CGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTATCA < 1:3562871/71‑1 TACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTATCAGGCCTA > 1:5352514/1‑63 TACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTT < 1:207959/53‑1 AAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTATCAGGCCTA > 1:1297954/1‑53 gcTGGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCG < 1:423301/69‑1 GGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT > 1:4305531/1‑70 GGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT > 1:1703141/1‑70 GGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGC < 1:2998829/67‑1 GAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCA > 1:2826639/1‑71 GAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT < 1:1040741/69‑1 GAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT < 1:2241225/69‑1 AATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT < 1:4719136/68‑1 ttGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGC > 1:1888675/3‑71 ttGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGC > 1:5025649/3‑71 ttGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGT > 1:5567619/3‑40 tGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCC > 1:4258136/2‑71 tGCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCC > 1:4708630/2‑71 GCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCG > 1:5154604/1‑71 GCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCG > 1:4888826/1‑71 GCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAG > 1:332573/1‑37 GCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCAG > 1:32117/1‑37 GCCTGATGCGCTACGCTTATCAGGCCTACGAGTTCA > 1:461289/1‑36 CTGATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGG > 1:1947449/1‑58 GATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATC > 1:4182421/1‑71 GATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTT < 1:5394254/60‑1 ATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:3107430/1‑71 ATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:1673904/1‑71 ATGCGCTACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATC > 1:3474405/1‑70 ACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAta > 1:2012476/1‑68 ACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAta > 1:3355961/1‑68 GCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAta < 1:271830/68‑3 TTATCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAA > 1:5583384/1‑40 TTATCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAA > 1:1171725/1‑40 TTATCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAA > 1:4212871/1‑40 TCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTG < 1:3019297/71‑1 TCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTG < 1:1496778/71‑1 TCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGC < 1:765018/58‑1 TCAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGC < 1:2927832/58‑1 CAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGC > 1:1660041/1‑71 CAGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGC > 1:5031944/1‑71 AGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCAC < 1:2827852/44‑1 AGGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTC > 1:2604112/1‑42 GGCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCT < 1:3217045/71‑1 GCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTG < 1:3302510/71‑1 GCCTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTG < 1:270384/71‑1 CTACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGC < 1:2745454/52‑1 ACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACG > 1:1725065/1‑70 ACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAA > 1:4640862/1‑55 ACGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATA > 1:4634188/1‑54 ACGAGTTCAGTGCTGT‑‑GTACGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAA > 1:1313807/1‑55 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCA < 1:3559362/71‑1 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGC < 1:2146912/70‑1 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGC < 1:4029648/70‑1 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCCTGCCTGACGC < 1:137436/70‑1 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAA > 1:5196982/1‑54 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAA > 1:2448353/1‑54 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAT < 1:3222217/52‑1 CGAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAT < 1:4216311/52‑1 GAGTTCAGTGCTGT‑‑G‑AGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAAT > 1:2675517/1‑71 TAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGAATCGCCTGATGCGCTACGCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2303803‑2303886‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatcaggcctacgAGTTCAGTGCTGT‑‑GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAAT > Exported/2925754‑2925824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |