| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 837,075 | C→T | 45.3% | D86D (GAC→GAT) | narJ → | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 837,075 | 0 | C | T | 45.3% | 26.4 / 95.1 | 82 | D86D (GAC→GAT) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| Reads supporting (aligned to +/- strand): ref base C (18/26); new base T (18/19); total (36/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAAT > Exported/837016‑837145 | gACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:347441/71‑1 (MQ=255)gACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGAACGCGGCCAGGc < 1:5569837/71‑1 (MQ=255) aCCGCGGGCGCACCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGc < 1:248931/70‑1 (MQ=255) ccGCGGGCGCACCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGcaa < 1:4219983/71‑3 (MQ=255) ccGCGGGCGCACCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGcaa < 1:2033718/71‑3 (MQ=255) gTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtg < 1:3691372/71‑1 (MQ=255) gCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggt < 1:1477056/70‑1 (MQ=255) gcgcaCCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtggtgg < 1:2844976/70‑1 (MQ=255) gcgcaCCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtggtgg < 1:4929275/70‑1 (MQ=255) ccACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACct > 1:5264352/1‑70 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtgttgg < 1:5638980/65‑1 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtggtgg < 1:4664664/65‑1 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtgg > 1:3892172/1‑62 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:3472542/1‑71 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:4472078/1‑71 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:4174436/1‑71 (MQ=255) cACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:2444782/1‑71 (MQ=255) cACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtgg < 1:3683966/65‑1 (MQ=255) aCGTCCCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGcaa > 1:3736215/1‑56 (MQ=255) cGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgctg > 1:3029830/1‑71 (MQ=255) gTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGc < 1:5464509/54‑1 (MQ=255) tcgctgctgctgTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGgc < 1:1388791/68‑1 (MQ=255) cgctgctgctgTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGgcg > 1:4414028/3‑71 (MQ=255) gctgctgctgTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtg > 1:3958707/2‑55 (MQ=255) gctgctgctgTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGgcg < 1:1021282/69‑1 (MQ=255) gctgctgctgTTCGAACATATTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGgcg < 1:3803419/69‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:900444/51‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGgcg > 1:4511865/1‑70 (MQ=255) cTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGgcg > 1:955244/1‑69 (MQ=255) tGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtgg < 1:4333687/57‑1 (MQ=255) tGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtgg < 1:352813/57‑1 (MQ=255) tGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:2359348/1‑71 (MQ=255) gctGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAg > 1:2021444/3‑70 (MQ=255) gTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:973012/48‑1 (MQ=255) gTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:2335640/48‑1 (MQ=255) ttGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtg > 1:1548587/1‑51 (MQ=255) ctGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc < 1:3437199/60‑1 (MQ=255) ctGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGt < 1:4773093/69‑1 (MQ=255) ctGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTa > 1:2197833/2‑71 (MQ=255) ctGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTa < 1:1249391/70‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTgg > 1:2438912/1‑63 (MQ=255) cTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACg < 1:241880/70‑1 (MQ=255) cTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGa < 1:1022181/71‑1 (MQ=255) cTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGcaa < 1:1369561/46‑3 (MQ=16) cTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTATGa < 1:2408335/71‑1 (MQ=255) cTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTATGa < 1:229261/71‑1 (MQ=255) gTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGag > 1:386382/1‑70 (MQ=255) gTTTGAACATGTGCACGGCGAATCCCGCGAC‑‑CGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcag > 1:2686838/1‑71 (MQ=255) tttGAACTTGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:1025207/41‑1 (MQ=255) tttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc < 1:3737028/41‑1 (MQ=255) tttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctg < 1:2986800/54‑1 (MQ=255) tttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGag < 1:2469044/69‑1 (MQ=255) ttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGa > 1:4370747/1‑42 (MQ=255) ttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca < 1:600224/70‑1 (MQ=255) tGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcag < 1:2064394/70‑1 (MQ=255) cgAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAAtggtg > 1:5423722/2‑46 (MQ=16) gAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGa < 1:2838369/65‑1 (MQ=255) tcATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctgc > 1:719290/2‑50 (MQ=255) aCATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:4525617/1‑50 (MQ=255) aCATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:456750/1‑50 (MQ=255) aCATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctg > 1:2669587/1‑49 (MQ=255) aCATGTTCATGCCGAGTCCAGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:5371076/1‑50 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctgc > 1:644956/1‑50 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctgc > 1:848913/1‑50 (MQ=255) aTGTGCACGGCGAATCCCGCGACC‑CGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAgcagca < 1:4636300/66‑1 (MQ=255) tgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTg < 1:2243148/71‑1 (MQ=255) cACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGc < 1:2103049/70‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGt > 1:5424827/1‑70 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGt > 1:3496941/1‑70 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACATGCTGGCGCAGTACGAGCAGCACGGCTTGCAGt > 1:5243615/1‑70 (MQ=255) gCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTa < 1:4200296/71‑1 (MQ=255) ccGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTATGAAAAGGTCGGCCTGCAgct < 1:4813993/69‑3 (MQ=255) cGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGGCGGAGTATGAAAAGGTCGGCCTGCAgctg > 1:1174080/1‑67 (MQ=255) tCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTGgcgg < 1:4534355/40‑2 (MQ=37) cccGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGc > 1:5614802/1‑71 (MQ=255) cgcgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcg > 1:1229473/1‑71 (MQ=255) cgcgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcg < 1:219901/71‑1 (MQ=255) gcgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgc > 1:4320596/1‑71 (MQ=255) gcgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcg > 1:2388511/1‑70 (MQ=255) cgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgcg < 1:1779828/71‑1 (MQ=255) gACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGa < 1:2819522/71‑1 (MQ=255) gACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGa < 1:284705/71‑1 (MQ=255) ccGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAAt < 1:1248093/71‑1 (MQ=255) | GACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAAT > Exported/837016‑837145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |