| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 983,528 | C→T | 14.8% | intergenic (+440/‑128) | ydfC → / → dicB | hypothetical protein/cell division inhibition protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 983,528 | 0 | C | T | 14.8% | 130.6 / 11.8 | 54 | intergenic (+440/‑128) | ydfC/dicB | hypothetical protein/cell division inhibition protein |
| Reads supporting (aligned to +/- strand): ref base C (23/23); new base T (3/5); total (26/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTCCGTGACTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTGGTTA > Exported/983459‑983598 | aCTCCGTGACTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCAcgc < 1:3643948/70‑1 (MQ=255) cGTGACTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGaa > 1:3093459/1‑70 (MQ=255) tGACTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAg > 1:3683709/1‑71 (MQ=255) aCTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGt > 1:3041768/1‑70 (MQ=255) ctctGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTaaaa > 1:44310/1‑71 (MQ=255) ctGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAAc > 1:3472261/1‑70 (MQ=255) ccgccCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaa < 1:701072/71‑1 (MQ=255) gccCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa > 1:3810154/1‑71 (MQ=255) gccCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa > 1:2859085/1‑71 (MQ=255) cccTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa > 1:3801619/1‑70 (MQ=255) cccTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaa < 1:2318810/67‑1 (MQ=255) ccTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAg > 1:2177498/1‑56 (MQ=255) tttttAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCgg < 1:2351362/49‑1 (MQ=255) tttttAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCgg < 1:1431139/49‑1 (MQ=255) tttAAAGTGAATTTTGTGATGCGGTGAATGCGGCTAAGCGCACGTggca > 1:2288969/1‑47 (MQ=37) ttAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaa < 1:1153227/63‑1 (MQ=255) ttAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAgtgt < 1:3432727/70‑1 (MQ=255) ttAAAGAGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAgtgt > 1:60501/1‑70 (MQ=255) tAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGaa > 1:4790084/1‑47 (MQ=255) tAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGaa > 1:2777883/1‑47 (MQ=255) tAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGaa > 1:3522728/1‑47 (MQ=255) tAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGtt < 1:4752168/70‑1 (MQ=255) aaaGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAAc > 1:5115125/1‑63 (MQ=255) aaaGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAAc > 1:4377844/1‑63 (MQ=255) aaGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTAt < 1:1607623/70‑1 (MQ=255) gAATTTTGTGATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaaaa > 1:4340373/1‑50 (MQ=255) gAATTTTGTGATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaaaa > 1:1109611/1‑50 (MQ=255) aaTTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTg > 1:1791464/1‑70 (MQ=255) ttttGTGATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaa < 1:5535740/45‑1 (MQ=25) ttttGTGATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaa < 1:3726905/45‑1 (MQ=25) ttttGTGATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaa < 1:1661474/45‑1 (MQ=25) ttGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGAtt > 1:5099483/1‑70 (MQ=255) gtgATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATtct < 1:3279245/70‑1 (MQ=255) gATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaa < 1:902769/39‑1 (MQ=25) gATGCGGTGAATGCGGCTAAGCGCACGTGGCACAGTTaa < 1:4210935/39‑1 (MQ=25) tggtgAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGtt < 1:1989506/51‑1 (MQ=255) tggtgAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGtt < 1:4610845/51‑1 (MQ=255) gtgAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCg > 1:4111513/1‑71 (MQ=255) gtgAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCg < 1:4843624/71‑1 (MQ=255) tgAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCgg < 1:1709916/71‑1 (MQ=255) gAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGc > 1:2829307/1‑71 (MQ=255) aaTGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa < 1:2236473/39‑1 (MQ=255) aaTGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa < 1:5371144/39‑1 (MQ=255) aaTGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaaaa < 1:454490/39‑1 (MQ=255) aaTGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGc < 1:2943790/70‑1 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaa < 1:5357137/35‑1 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCaaa < 1:3934297/35‑1 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAAc > 1:4410330/1‑38 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGa > 1:2614304/1‑53 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGa > 1:4336838/1‑53 (MQ=255) tGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGa > 1:4063963/1‑53 (MQ=255) aGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGtt < 1:5331030/70‑1 (MQ=255) cACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTg < 1:5567380/71‑1 (MQ=255) aCGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATcc < 1:161028/52‑1 (MQ=255) aCGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTgg < 1:4898959/71‑1 (MQ=255) gcgGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTGGtt < 1:3903837/71‑1 (MQ=255) cgGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTGGTTa < 1:1441893/71‑1 (MQ=255) | ACTCCGTGACTGCTCTGCCGCCCTTTTTAAAGTGAATTTTGTGATGTGGTGAATGCGGCTGAGCGCACGCGGAACAGTTAAAACCAAAAACAGTGTTATGGGTGGATTCTCTGTATCCGGCGTTAATTGTTAACTGGTTA > Exported/983459‑983598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |