| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,191,074 | A→C | 78.2% | intergenic (+415/+485) | yeaJ → / ← rnd | predicted diguanylate cyclase/ribonuclease D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,191,074 | 0 | A | C | 78.2% | 116.6 / 17.4 | 50 | intergenic (+415/+485) | yeaJ/rnd | predicted diguanylate cyclase/ribonuclease D |
| Reads supporting (aligned to +/- strand): ref base A (5/6); new base C (16/23); total (21/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAGTTCGCCTA > Exported/1191010‑1191144 | tGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAgcgc > 1:5570332/1‑70 (MQ=255)tGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCt < 1:4673634/71‑1 (MQ=255)tGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCt < 1:2088420/71‑1 (MQ=255)tGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCAGGCAATGTCTGCGCTTTTTCCATCAgcgc > 1:1267023/1‑70 (MQ=255) tCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTag > 1:5608914/1‑71 (MQ=255) cATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTagc < 1:4215690/70‑1 (MQ=255) cATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTag > 1:3496956/1‑69 (MQ=255) cATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTag > 1:5306911/1‑69 (MQ=255) tCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTagcagc < 1:419628/71‑1 (MQ=255) tCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTagcagc < 1:5386794/71‑1 (MQ=255) aGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGt > 1:4852254/1‑71 (MQ=255) tAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTag > 1:787049/1‑61 (MQ=255) tAAGCATCGGCTACGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTa > 1:4621321/1‑71 (MQ=255) aTCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGt > 1:42101/1‑70 (MQ=255) ggCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGa > 1:157306/1‑69 (MQ=255) cGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCg < 1:5407908/69‑1 (MQ=255) tAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTa < 1:3120347/44‑1 (MQ=255) tAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTa < 1:1226220/44‑1 (MQ=255) tAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGAttt > 1:4164948/1‑71 (MQ=255) tAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGAtt > 1:5564887/1‑70 (MQ=255) aGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCg > 1:1094284/1‑71 (MQ=255) aGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCg > 1:3610064/1‑71 (MQ=255) ggCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGc < 1:2876094/71‑1 (MQ=255) gCATCTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCt < 1:1975552/71‑1 (MQ=255) cATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTa < 1:5551022/71‑1 (MQ=255) aTCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTa < 1:4915245/70‑1 (MQ=255) aTCTTCCGGCAATGTCTGAGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTAc > 1:2068519/1‑71 (MQ=255) cTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCg < 1:4176068/58‑1 (MQ=255) cTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCg < 1:5471537/58‑1 (MQ=255) cTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTc < 1:573205/64‑1 (MQ=255) cTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTc < 1:4076684/64‑1 (MQ=255) cTTCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCg > 1:1647132/1‑71 (MQ=255) ttCCGGCAATGTCTGCGCTTTTTCCACCAGCGCTa > 1:3476348/1‑35 (MQ=255) ccGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTAcc < 1:1848379/67‑1 (MQ=255) ccGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGa < 1:1000166/70‑1 (MQ=255) ccGGCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGa < 1:537302/70‑1 (MQ=255) cGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATa < 1:553018/71‑1 (MQ=255) ggCAATGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATaa < 1:865928/71‑1 (MQ=255) aaTGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTc < 1:1859781/56‑1 (MQ=255) tGTCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGAtt < 1:2956484/52‑1 (MQ=255) tCTGCGCTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAg < 1:4070332/70‑1 (MQ=255) cgcTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTg < 1:2098382/70‑1 (MQ=255) gcTTTTTCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTc > 1:4241315/1‑71 (MQ=255) tttttCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCgg < 1:1532951/40‑1 (MQ=255) tttttCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCgg < 1:1113457/40‑1 (MQ=255) tttttCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCgg < 1:86608/40‑1 (MQ=255) tttCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAGt > 1:1646456/1‑71 (MQ=255) ttCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAg < 1:3671557/69‑1 (MQ=255) ttCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGc > 1:1228504/1‑44 (MQ=255) tCCACCAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAAccc > 1:207282/1‑57 (MQ=255) ccaccaGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAGTTc < 1:665912/70‑1 (MQ=255) aaGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAGTTCGCCTa < 1:2564804/71‑1 (MQ=255) | TGTCCATCAGGTTAAGCATCGGCTGCGGTAAGGCATCTTCCGGCAATGTCTGCGCTTTTTCCACAAGCGCTAGCAGCGTTTTACCGTGAAAGCGGATTTCGCTACCGGATAAACCCAGGCTGTCCAGTTCGCCTA > Exported/1191010‑1191144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |