| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,258,449 | A→G | 16.3% | intergenic (+120/+45) | yecP → / ← torZ | predicted methyltransferase/trimethylamine N‑oxide reductase system III, catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,258,449 | 0 | A | G | 16.3% | 135.6 / 16.0 | 55 | intergenic (+120/+45) | yecP/torZ | predicted methyltransferase/trimethylamine N‑oxide reductase system III, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base A (23/23); new base G (3/6); total (26/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGAT > Exported/1258382‑1258516 | aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGt < 1:4203399/71‑1 (MQ=255)aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGt < 1:2336628/71‑1 (MQ=255) ccTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGtt > 1:1082953/1‑71 (MQ=255) tGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGttt > 1:1692566/1‑69 (MQ=255) cTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCAt < 1:3921158/71‑1 (MQ=255) cTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCAt < 1:3633435/71‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCAt > 1:2458677/1‑70 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCAt > 1:3643659/1‑70 (MQ=255) aagttCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCGttt > 1:2317224/4‑66 (MQ=9) aTTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATaa > 1:4601760/1‑70 (MQ=255) cAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACg > 1:1236330/1‑58 (MQ=255) cAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCt < 1:943738/70‑1 (MQ=255) aaTATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCGt > 1:3009687/1‑58 (MQ=9) aaTATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCGt > 1:1525217/1‑58 (MQ=9) atatatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAg < 1:357589/71‑1 (MQ=255) atatatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAg < 1:2701218/71‑1 (MQ=255) tatatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:948591/1‑69 (MQ=255) atTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc < 1:3789462/70‑1 (MQ=255) ttGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGccc > 1:5067378/1‑71 (MQ=255) cAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt < 1:3583970/71‑1 (MQ=255) gggACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTc < 1:1467958/71‑1 (MQ=255) ggACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:2382131/49‑1 (MQ=255) tATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgc < 1:5310211/57‑1 (MQ=255) aTGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTa < 1:2472096/38‑1 (MQ=255) tGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgcgc < 1:4297408/71‑1 (MQ=255) tGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc < 1:1599104/69‑1 (MQ=255) tGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCg < 1:4712131/39‑1 (MQ=11) tGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCg < 1:1362744/39‑1 (MQ=11) tGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCg < 1:2256842/39‑1 (MQ=11) tGTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCg < 1:2115693/39‑1 (MQ=11) gTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCGttt < 1:420357/41‑1 (MQ=14) gTAGACCTGATAAGCATAGCGCATCAGGCTGCTTTGCGttt < 1:5264968/41‑1 (MQ=14) ggCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAtt < 1:1631156/71‑1 (MQ=255) gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTc < 1:3030715/59‑1 (MQ=255) gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTc < 1:3712108/59‑1 (MQ=255) gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTc < 1:1320987/71‑1 (MQ=255) cTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCAc > 1:3640606/1‑71 (MQ=255) tGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAtt > 1:183704/1‑67 (MQ=255) tGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAtt > 1:3065350/1‑67 (MQ=255) aTAAGCATAGCGCATCAGGCAGCTTTACGTTTGCa > 1:5626581/1‑35 (MQ=255) aTAAGCATAGCGCATCAGGCAGCTTTACGTTTGCa > 1:2680155/1‑35 (MQ=255) aTAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTc > 1:5153246/1‑71 (MQ=255) aGCATAGCGCATCAGGCAGCTTTACGTTTGCATaa > 1:1141085/1‑35 (MQ=255) aGCATAGCGCATCAGGCAGCTTTACGTTTGCATaa > 1:440664/1‑35 (MQ=255) gCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTAc < 1:1335804/71‑1 (MQ=255) tAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGt < 1:4147410/63‑1 (MQ=255) tAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGcc < 1:4514489/71‑1 (MQ=255) gcgcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCa > 1:2140568/1‑58 (MQ=255) gcgcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCa > 1:1511959/1‑58 (MQ=255) cgcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACg < 1:424829/59‑1 (MQ=255) cATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAAc < 1:3369029/71‑1 (MQ=255) aGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAgct > 1:4949797/1‑71 (MQ=255) aGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAgct > 1:1801471/1‑71 (MQ=255) aGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAgct > 1:1311196/1‑71 (MQ=255) gCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAgctgg > 1:4401814/1‑71 (MQ=255) tttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGAt > 1:502412/1‑71 (MQ=255) | ACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGAT > Exported/1258382‑1258516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |