| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,259,757 | A→G | 14.0% | Y389Y (TAT→TAC) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,259,757 | 0 | A | G | 14.0% | 117.8 / 10.3 | 50 | Y389Y (TAT→TAC) | torZ | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base A (17/26); new base G (4/3); total (21/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCA > Exported/1259689‑1259821 | gCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAt < 1:923526/70‑1 (MQ=255)gCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAt < 1:916944/70‑1 (MQ=255) aaTCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAt > 1:5641937/1‑68 (MQ=255) aaTCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAt > 1:321698/1‑68 (MQ=255) aaTCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTAGGAGTAATGATAag < 1:4812935/71‑1 (MQ=255) aaTCGCCGCAGACATTTCCGGCAGCAAGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGAt > 1:381636/1‑68 (MQ=255) aTCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAaga < 1:3590063/71‑1 (MQ=255) aTCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAaga < 1:318121/71‑1 (MQ=255) tCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAagag < 1:1018400/71‑1 (MQ=255) cgccgcAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAag > 1:1223154/1‑68 (MQ=255) gccgcAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga > 1:1541340/1‑70 (MQ=255) cAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCa < 1:1028929/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:1502292/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:4042393/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:5161683/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:2435816/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:1930038/71‑1 (MQ=255) aGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCaa < 1:1665503/71‑1 (MQ=255) aCATTTCCGGCAGCACGCCGCCAACACGCGTCGGTTTGCCACCGTTGGAGTAATGATAAGAGAAACCaaaa < 1:5297226/71‑1 (MQ=255) aCATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAAcc < 1:2691006/67‑1 (MQ=255) cATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAAc < 1:5537514/71‑1 (MQ=255) ttCAGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga > 1:135840/1‑59 (MQ=255) gcaCGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGgt > 1:3502688/1‑71 (MQ=255) aCGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGa > 1:3587890/1‑42 (MQ=255) aCGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGa > 1:3037138/1‑42 (MQ=255) aCGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGa > 1:3310084/1‑42 (MQ=255) gccgccAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTAc > 1:5665775/1‑71 (MQ=255) ccgccAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTAcc < 1:1749692/71‑1 (MQ=255) cgccAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga > 1:1222053/1‑45 (MQ=255) cgccAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCa < 1:1386230/71‑1 (MQ=255) cgccAACACGCGGCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCa < 1:5047619/71‑1 (MQ=255) cAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATc > 1:2102408/1‑71 (MQ=255) aaCACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCt > 1:109426/1‑71 (MQ=255) acGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga > 1:4261957/1‑38 (MQ=255) acGCGTCGGGTTGCCACCGTTGGAGTAATGATAAgaga > 1:4913034/1‑38 (MQ=255) cgcgTCGGGTTGCCACCGTTGGAGTAATGAAAAGAGAAACCAAAAccgccg > 1:2359074/1‑51 (MQ=255) cgTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCt < 1:1088197/70‑1 (MQ=255) cgTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTa < 1:1946550/71‑1 (MQ=255) tggggTTACCACCATTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCaa > 1:3184431/3‑70 (MQ=255) tCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTa < 1:742430/69‑1 (MQ=255) gggTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTa > 1:4083805/1‑54 (MQ=255) gTTACCACCATTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACAttg > 1:1004409/1‑69 (MQ=255) ttaccaccaTTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATtgc > 1:2755281/4‑71 (MQ=255) ttGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATcgc > 1:4433378/1‑71 (MQ=255) taccaccaTTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATtgc > 1:239651/3‑70 (MQ=255) ccaccaTTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGcc < 1:5319517/50‑1 (MQ=255) ggAGTAATTATAAGAGAAACCAAAACCGCCGCCCGGTGTACCa < 1:4634668/43‑1 (MQ=255) gAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc < 1:2844667/71‑1 (MQ=255) gAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc < 1:3032831/71‑1 (MQ=255) aGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc > 1:4600250/1‑70 (MQ=255) aaaTGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGc < 1:3618007/62‑1 (MQ=255) aaaTGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGAcga < 1:419678/69‑3 (MQ=255) tGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCa < 1:1196808/36‑1 (MQ=255) | GCAATCGCCGCAGACATTTCCGGCAGCACGCCGCCAACACGCGTCGGGTTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCA > Exported/1259689‑1259821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |