| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,337,480 | A→G | 76.0% | S5S (AGT→AGC) | wcaF ← | predicted acyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,337,480 | 0 | A | G | 76.0% | 137.9 / 41.1 | 79 | S5S (AGT→AGC) | wcaF | predicted acyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (15/4); new base G (30/30); total (45/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.41e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
TACTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAGGT > Exported/1337414‑1337545 | tACTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCtt > 1:2957886/1‑70 (MQ=255) cttcccACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTaa < 1:3579935/67‑1 (MQ=255) cTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTaaa < 1:4114445/71‑1 (MQ=255) cTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTaa > 1:46917/1‑70 (MQ=255) cTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTaa < 1:4368718/70‑1 (MQ=255) caccaTAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTg > 1:156448/1‑71 (MQ=255) caccaTAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTg < 1:4302375/71‑1 (MQ=255) aTAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCtt > 1:426087/1‑66 (MQ=255) aTAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCAtt < 1:947865/71‑1 (MQ=255) aTAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCAtt > 1:2073851/1‑71 (MQ=255) gCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTaaa < 1:5266441/56‑1 (MQ=255) aCTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTcc > 1:3385274/1‑71 (MQ=255) aCTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTcc > 1:3237177/1‑71 (MQ=255) aCTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGttttac > 1:3395679/1‑69 (MQ=255) aCTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTcc > 1:1739101/1‑71 (MQ=255) cTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCt < 1:4096020/71‑1 (MQ=255) cTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCt < 1:623693/71‑1 (MQ=255) ttAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCtt > 1:4441986/1‑70 (MQ=255) ttAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCtt > 1:4993869/1‑70 (MQ=255) ttAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCtt > 1:3273173/1‑70 (MQ=255) ttAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTta > 1:2446581/1‑71 (MQ=255) tAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTta < 1:883486/70‑1 (MQ=255) tAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTta > 1:1927161/1‑70 (MQ=255) tAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTta > 1:1676737/1‑70 (MQ=255) tAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTta > 1:1659535/1‑70 (MQ=255) tAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATAtt > 1:60187/1‑71 (MQ=255) gCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGtt > 1:5695464/1‑58 (MQ=255) gCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGtt > 1:1621615/1‑58 (MQ=255) cGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGttt < 1:4005145/58‑1 (MQ=255) cGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGttt < 1:1717938/58‑1 (MQ=255) ccgccCCGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACtt < 1:5000553/70‑1 (MQ=255) cgccCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTg < 1:1352867/71‑1 (MQ=255) ccccGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATAtt < 1:3722712/60‑1 (MQ=255) ccccGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGt < 1:4801746/70‑1 (MQ=255) ccccGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGt > 1:1128681/1‑70 (MQ=255) cccGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTta < 1:5070010/71‑1 (MQ=255) ccGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCtt < 1:2313482/53‑1 (MQ=255) cGGAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGtt < 1:4883674/46‑1 (MQ=255) gAACCCTTTCGGCACCGAGAAACCGCTTAAATCtt > 1:306495/1‑35 (MQ=255) gAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGt > 1:2010454/1‑65 (MQ=255) gAACCCTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtatat > 1:5034088/1‑70 (MQ=255) cTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtat > 1:1604682/1‑63 (MQ=255) cTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtat > 1:3186818/1‑63 (MQ=255) cTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtat > 1:3392318/1‑63 (MQ=255) cTTTCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCt < 1:2199534/71‑1 (MQ=255) tttCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCtt > 1:1147308/1‑71 (MQ=255) tCGGCACCGAGAAACCGCTTAAATCTTGCATTGGtt > 1:1327646/1‑36 (MQ=255) tCGGCACCGAGAAACCGCTTAAATCTTGCATTGGtt > 1:310229/1‑36 (MQ=255) tCGGCACCGAGAAACCGCTTAAATCTTGCATTGGtt > 1:2996442/1‑36 (MQ=255) tCGGCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCtt < 1:59025/69‑1 (MQ=255) gCACCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTc < 1:865400/71‑1 (MQ=255) cACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCt < 1:199590/71‑1 (MQ=255) aCCGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCtt > 1:606810/1‑71 (MQ=255) ccGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATAtt < 1:3264361/41‑1 (MQ=255) ccGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACtt < 1:5527516/48‑1 (MQ=255) cGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCttt > 1:3898029/1‑70 (MQ=255) cGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTg < 1:1943437/71‑1 (MQ=255) cGAGAAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTg < 1:4554737/71‑1 (MQ=255) gagaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGtt < 1:3256696/50‑1 (MQ=255) gagaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGtt < 1:3249902/50‑1 (MQ=255) gagaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGtt < 1:1602760/50‑1 (MQ=255) gagaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtatat < 1:4879406/54‑1 (MQ=255) gagaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCttt > 1:2971226/1‑69 (MQ=255) gagaAACCACTTAAATCCTGCATTGGTTTTCCTTATATTCAGACttt < 1:3724934/47‑1 (MQ=255) agaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGa > 1:2743975/1‑42 (MQ=255) agaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGa > 1:2737287/1‑42 (MQ=255) agaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtat > 1:2873613/1‑51 (MQ=255) agaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTtat > 1:587810/1‑51 (MQ=255) gaAACCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg < 1:2334129/71‑1 (MQ=255) gaAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGGTTTCGTCTTTGAgg > 1:2792955/1‑71 (MQ=255) gaAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg > 1:5684829/1‑71 (MQ=255) gaAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg > 1:2511516/1‑71 (MQ=255) aaaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACttt < 1:3478123/44‑1 (MQ=255) aaaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCttt > 1:4011231/1‑59 (MQ=255) aaaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg > 1:2647933/1‑70 (MQ=255) aaaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAGgt < 1:5440015/71‑1 (MQ=255) aaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg > 1:447298/1‑69 (MQ=255) aaCCGCTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAgg > 1:1878728/1‑69 (MQ=255) aaCCGCTTAAATCTTGCATTGGTTATCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAg > 1:24230/1‑68 (MQ=255) | TACTGCCCACCATAATTGCACTTTAATAGCGTTGCCGCCCCGGAACCCTTTCGGCACCGAGAAACCACTTAAATCTTGCATTGGTTTTCCTTATATTCAGACTTTGTTATATAAGGCTTTCGTCTTTGAGGT > Exported/1337414‑1337545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |