| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,395,715 | G→A | 14.9% | A141T (GCG→ACG) | setB → | lactose/glucose efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,395,715 | 0 | G | A | 14.9% | 260.3 / 29.0 | 107 | A141T (GCG→ACG) | setB | lactose/glucose efflux system |
| Reads supporting (aligned to +/- strand): ref base G (38/53); new base A (9/7); total (47/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 107 total aligned reads displayed.
TGGCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTGGCT > Exported/1395648‑1395783 | tGGCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGc < 1:2859038/69‑1 (MQ=255)tGGCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGc < 1:4069707/69‑1 (MQ=255) ggCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCgg < 1:2464191/70‑1 (MQ=255) ggCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCgg < 1:3938887/70‑1 (MQ=255) ggCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCgg < 1:655697/70‑1 (MQ=255) gCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTg < 1:2601181/71‑1 (MQ=255) tCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGAt > 1:4926446/1‑71 (MQ=255) tCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGAt > 1:1455267/1‑71 (MQ=255) cGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATg > 1:3794624/1‑71 (MQ=255) aCCGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt < 1:1246216/71‑1 (MQ=255) aCCGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt < 1:5499068/71‑1 (MQ=255) aCCGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt < 1:1748280/71‑1 (MQ=255) aCCGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt < 1:1754783/71‑1 (MQ=255) cGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt > 1:4275324/1‑69 (MQ=255) cGCAAACCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGtt > 1:5679529/1‑69 (MQ=255) gCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAg > 1:2190858/1‑71 (MQ=255) cTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGc > 1:3744981/1‑71 (MQ=255) cTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGc < 1:1596494/71‑1 (MQ=255) cTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGc > 1:449811/1‑71 (MQ=255) aaCCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGctc > 1:4711307/1‑71 (MQ=255) aCCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGctct > 1:2786936/1‑71 (MQ=255) aCCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACg > 1:3234405/1‑56 (MQ=255) aCCCGCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAgt < 1:3406017/68‑2 (MQ=255) ccGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttt < 1:1777486/71‑1 (MQ=255) ccGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttt < 1:4381194/71‑1 (MQ=255) cGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCtttt < 1:5526964/71‑1 (MQ=255) cGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttt < 1:4016472/70‑1 (MQ=255) gCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTg < 1:4100766/55‑1 (MQ=255) gCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGa > 1:2115148/1‑56 (MQ=255) gCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt > 1:4897041/1‑71 (MQ=255) gCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt < 1:2502730/71‑1 (MQ=255) gCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCtt < 1:1207736/68‑1 (MQ=255) gCAAATGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCAt > 1:1305554/1‑57 (MQ=255) cAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCtttttt < 1:3541979/71‑1 (MQ=255) aaaTGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACattttt > 1:2876511/1‑70 (MQ=255) aaaTGTTCGCCCTCGCCCGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACATTTTTa > 1:2025824/1‑71 (MQ=255) gTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTAcgcg > 1:4945487/1‑71 (MQ=255) gTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTAcgcg > 1:3163144/1‑71 (MQ=255) gTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTAcg > 1:4327109/1‑69 (MQ=255) tttGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt < 1:4347731/64‑1 (MQ=255) tttGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTa < 1:661291/66‑1 (MQ=255) ttgcccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCt > 1:576392/1‑71 (MQ=255) tgcccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt > 1:686189/1‑62 (MQ=255) tgcccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCtt < 1:2221757/59‑1 (MQ=255) gcccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTc < 1:3412457/70‑1 (MQ=255) gcccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTc < 1:5692343/70‑1 (MQ=255) cccttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCa < 1:1567975/70‑1 (MQ=255) cttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGt > 1:3063026/1‑71 (MQ=255) ttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGt < 1:3018376/40‑1 (MQ=255) ttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGt < 1:4801565/40‑1 (MQ=255) ttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt < 1:2090912/57‑1 (MQ=255) ttgcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAg < 1:1125024/68‑1 (MQ=255) tcgcccGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACattttt < 1:4686250/56‑1 (MQ=255) tcgcccGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACATTTTTa > 1:839972/3‑59 (MQ=255) tcgcccGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACATTTTTa > 1:3694005/3‑59 (MQ=255) cgcccGTGAACACGCCGACAGAACAGGCCGTGAGACGGTCATGTTCAGTACATTTTTAc > 1:3942509/2‑59 (MQ=255) gcccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGttt < 1:800569/70‑1 (MQ=255) ccGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCa < 1:3915962/70‑1 (MQ=255) ccGAGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGttt < 1:2147932/68‑1 (MQ=255) cGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGttt < 1:2228594/67‑1 (MQ=255) gTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt < 1:3531149/51‑1 (MQ=255) gTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCa > 1:1669390/1‑68 (MQ=255) gTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTg < 1:5150326/71‑1 (MQ=255) gTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTg > 1:1913207/1‑71 (MQ=255) gAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttt < 1:2201812/47‑1 (MQ=255) aaCATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCAc > 1:755256/1‑66 (MQ=255) aaCATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCAc > 1:4962930/1‑66 (MQ=255) aaCATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCa > 1:413784/1‑71 (MQ=255) aaCATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCa < 1:3217458/71‑1 (MQ=255) aaCATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCa > 1:1269982/1‑71 (MQ=255) tGCCGACAAAACCGGACGTGAGGAGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATggg > 1:4571971/1‑71 (MQ=255) gCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATggg > 1:4085080/1‑70 (MQ=255) ccGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGttt < 1:4090419/57‑1 (MQ=255) ccGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGttt < 1:4097122/57‑1 (MQ=255) ccGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGt < 1:3891430/70‑1 (MQ=255) ccGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTc < 1:2122605/71‑1 (MQ=255) cGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCt < 1:408682/49‑1 (MQ=255) gACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCAt < 1:3971058/71‑1 (MQ=255) aCAAAACTGGACGTGAGGCGGTGATGTTCAGCTCtttt < 1:1221231/38‑1 (MQ=255) aCAAAACCGGACGTGAGGCGGTGATGTTCAGCTCtttt < 1:1438642/38‑1 (MQ=255) aCAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCa > 1:3479667/1‑56 (MQ=255) aCAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCa > 1:1879672/1‑56 (MQ=255) aCAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCAtt < 1:5426095/71‑1 (MQ=255) cAAAACCGGACGTGAGGCGGTGATGTTCAGCTCttttt < 1:4366530/38‑1 (MQ=255) cAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCAc > 1:2882481/1‑56 (MQ=255) aaaaCCGGACGTGAGGCGGTGATGTTCAGCTCtttttt > 1:3911806/1‑38 (MQ=255) aaaaCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATg < 1:4625564/62‑1 (MQ=255) aaaaCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTgg > 1:4104137/1‑71 (MQ=255) aaaaCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTgg > 1:160445/1‑71 (MQ=255) aaCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGcc > 1:4932554/1‑71 (MQ=255) aCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTAcg > 1:5235159/1‑38 (MQ=255) aCCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTAcg > 1:1032836/1‑38 (MQ=255) cGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCAt > 1:2878861/1‑63 (MQ=255) gACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTc < 1:1508296/59‑1 (MQ=255) gACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCg < 1:3737503/71‑1 (MQ=255) gTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTg < 1:157840/71‑1 (MQ=255) tGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTgg < 1:5035908/71‑1 (MQ=255) aGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTGGc < 1:4961931/70‑1 (MQ=255) aGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTGGCt < 1:3353607/71‑1 (MQ=255) aGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTGGCt < 1:4653523/71‑1 (MQ=255) | TGGCTCGACCGCTAACCCGCAAATGTTTGCCCTTGCCCGTGAACATGCCGACAAAACCGGACGTGAGGCGGTGATGTTCAGCTCTTTTTTACGCGCTCAGGTTTCACTGGCATGGGTCATTGGCCCACCGCTGGCT > Exported/1395648‑1395783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |