| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,513,033 | C→A | 12.4% | intergenic (+156/+276) | pta → / ← ubiX | phosphate acetyltransferase/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,513,033 | 0 | C | A | 12.4% | 139.5 / 6.0 | 48 | intergenic (+156/+276) | pta/ubiX | phosphate acetyltransferase/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| Reads supporting (aligned to +/- strand): ref base C (25/17); new base A (3/3); total (28/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.47e-01 | |||||||||||
TTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTGTGTGTTTGCAGG > Exported/1512963‑1513103 | ttAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCGCTTTGCATACTTc > 1:1405011/1‑71 (MQ=255) aaTCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTcc > 1:365561/1‑70 (MQ=255) tCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCAc > 1:791243/1‑71 (MQ=255) tCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCAc > 1:1516572/1‑71 (MQ=255) ttCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTg > 1:4130699/1‑71 (MQ=255) tCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTGt > 1:5299312/1‑71 (MQ=255) aTTATCTTGCTTAACTGCTCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTGtttt < 1:1728248/70‑3 (MQ=255) aTTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTa < 1:2179613/69‑1 (MQ=255) aTTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTa < 1:5326508/69‑1 (MQ=255) ttATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTTCATACTTCCCACTTTGTTACAt < 1:4793739/71‑1 (MQ=255) ttATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACa > 1:4385585/1‑70 (MQ=255) ttATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACa > 1:5485179/1‑70 (MQ=255) tATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCAGTTTGCATACTTacc < 1:4989994/58‑1 (MQ=255) tATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTacc < 1:5666028/58‑1 (MQ=255) aTCTTGCTTAACTGCGCTGCATCAAGGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATa < 1:3128165/70‑1 (MQ=255) tGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCt > 1:1398560/1‑71 (MQ=255) tGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCt > 1:4469522/1‑71 (MQ=255) cTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTc < 1:4648780/70‑1 (MQ=255) ttAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTGtt < 1:4998410/58‑1 (MQ=255) ttAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTGtt < 1:3929655/58‑1 (MQ=255) aaCTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACTTTGtttt > 1:2447372/1‑56 (MQ=255) cTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGa < 1:3802840/71‑1 (MQ=255) gcTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:5122490/71‑1 (MQ=255) gcTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:4907136/71‑1 (MQ=255) gcTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:5144849/71‑1 (MQ=255) cTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:4614581/70‑1 (MQ=255) cTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:1049966/70‑1 (MQ=255) gCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGc > 1:1013764/1‑71 (MQ=255) gCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGc > 1:3279193/1‑71 (MQ=255) tCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCt < 1:126061/69‑1 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGtt > 1:4970700/1‑42 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCttttt > 1:1322984/1‑71 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCttttt < 1:1651812/71‑1 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCttttt < 1:2884956/71‑1 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCaa > 1:2016135/1‑51 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCaa > 1:4468621/1‑51 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtg < 1:3573463/71‑1 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAACTGAAAATGGCTTTTTTAt < 1:2168497/70‑1 (MQ=255) tctcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:2454023/1‑48 (MQ=255) tctcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:2890308/1‑48 (MQ=255) tctcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:4510192/1‑48 (MQ=255) tctcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:4056922/1‑48 (MQ=255) tcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:328816/1‑46 (MQ=255) tcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGaaaa > 1:3412557/1‑46 (MQ=255) tcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtgttg > 1:150090/1‑62 (MQ=255) tcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtgttg > 1:3604577/1‑62 (MQ=255) aCTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTa > 1:3461371/1‑46 (MQ=255) cTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTGTGTGTTTg > 1:4835554/1‑70 (MQ=255) ttCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTgtgt < 1:1334207/52‑1 (MQ=255) tCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAt > 1:3579430/1‑44 (MQ=255) tCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAt > 1:1310217/1‑44 (MQ=255) tCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAt > 1:3505677/1‑44 (MQ=255) cccACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTGTGTGTTTGCa > 1:1438873/1‑69 (MQ=255) cccACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTGTGTGTTTGCAgg > 1:5654554/1‑71 (MQ=255) | TTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTTGTGTGTTTGCAGG > Exported/1512963‑1513103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |