| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,747,012 | A→G | 34.1% | intergenic (+96/+113) | srmB → / ← yfiE | ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,747,012 | 0 | A | G | 34.1% | 108.6 / 69.5 | 82 | intergenic (+96/+113) | srmB/yfiE | ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (18/36); new base G (13/15); total (31/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
ATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATA > Exported/1746942‑1747073 | aTTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAata > 1:2821384/1‑71 (MQ=255) aaaGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAatatat < 1:3474954/70‑1 (MQ=255) aaGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTg < 1:796947/71‑1 (MQ=255) actgatgacaaaggtaaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGa < 1:2292355‑M2/51‑1 (MQ=255) actgatgacaaaggtaaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGa < 1:2818381‑M2/51‑1 (MQ=255) gTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAatata < 1:2024131/66‑1 (MQ=255) gTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGaa < 1:2751358/71‑1 (MQ=255) gTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGa < 1:3473074/70‑1 (MQ=255) tGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAt < 1:5074793/71‑1 (MQ=255) cTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAttt > 1:1283976/1‑71 (MQ=255) tgacaaaggtaaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTg < 1:1024386‑M2/56‑1 (MQ=255) gCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGc < 1:1178496/70‑1 (MQ=255) gCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGc < 1:4691263/70‑1 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGa > 1:3973708/1‑70 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGAt > 1:1613768/1‑71 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGAt > 1:4283624/1‑71 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGAt > 1:1474693/1‑71 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATc < 1:947765/71‑1 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATc < 1:5576898/71‑1 (MQ=255) gtaaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGaa < 1:1234328‑M2/52‑1 (MQ=255) gtaaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAAttt < 1:289721‑M2/55‑1 (MQ=255) gCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCt < 1:3997055/71‑1 (MQ=255) aaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAAtt > 1:392972‑M2/6‑59 (MQ=255) aaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGc > 1:4729318‑M2/6‑62 (MQ=255) aaaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCAc > 1:4841015‑M2/6‑64 (MQ=255) aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:5417556/71‑1 (MQ=255) aaatTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGt < 1:3822201‑M2/67‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGt < 1:1747399/71‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGt < 1:5319875/71‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATAAATTGTATTTGCACGATCTTGt < 1:2638081/71‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg > 1:1255450/1‑69 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGa < 1:4109525/61‑1 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCAAGa < 1:1051562/61‑1 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTg > 1:1216731/1‑56 (MQ=14) tGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGc > 1:3313732/1‑57 (MQ=14) ccTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCg < 1:3962906/71‑1 (MQ=255) ccTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCg < 1:337807/71‑1 (MQ=14) cTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCg > 1:3841755/1‑70 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTg < 1:5583573/62‑1 (MQ=14) gATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGc < 1:3236889/52‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGa > 1:2652614/1‑70 (MQ=14) aTGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:4543787/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:4336819/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGAt < 1:2012413/70‑1 (MQ=14) tGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATa < 1:5656641/70‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATaa < 1:3724856/71‑1 (MQ=14) cgcTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAg < 1:537265/70‑1 (MQ=255) cgcTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTg < 1:1601060/57‑1 (MQ=14) cgcTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTg < 1:2101676/57‑1 (MQ=14) gcTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGc < 1:1839796/71‑1 (MQ=14) cTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCg < 1:211605/71‑1 (MQ=255) cTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCg < 1:3888979/71‑1 (MQ=255) cTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGa < 1:5555709/40‑1 (MQ=14) cTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGa < 1:3492326/40‑1 (MQ=14) cTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAAt > 1:4402383/1‑42 (MQ=14) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:1050744/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:627051/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:3487589/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:1918981/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:3085331/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:2099620/1‑35 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAtt < 1:3675104/41‑1 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAtt < 1:1440307/41‑1 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAtt < 1:5037317/41‑1 (MQ=255) aCGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATaa > 1:4356994/1‑65 (MQ=14) cGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGc > 1:3622613/1‑57 (MQ=14) cGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGc > 1:2093406/1‑57 (MQ=14) cGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGtt > 1:3799248/1‑70 (MQ=14) cGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGtt > 1:3952435/1‑70 (MQ=14) gCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTg > 1:325515/1‑41 (MQ=255) gCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTg > 1:1157651/1‑41 (MQ=255) cTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAc < 1:116695/71‑1 (MQ=255) ttATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGtt < 1:1500793/67‑1 (MQ=255) tATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGTTTAcgc > 1:2397133/1‑71 (MQ=11) cAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcgccg > 1:2219218/1‑70 (MQ=255) aGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCa < 1:3075374/71‑1 (MQ=255) ccTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAgg < 1:877077/55‑1 (MQ=255) ccTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAgg < 1:5315591/55‑1 (MQ=255) cTACGTGGCTCATGCAATATATTGAATTTGCACGATc > 1:2937576/1‑37 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGc > 1:3182663/1‑52 (MQ=255) gTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa > 1:4465721/1‑48 (MQ=255) gTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa > 1:4243018/1‑48 (MQ=255) gTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCAt < 1:4993722/64‑1 (MQ=255) gTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCAt < 1:3191174/64‑1 (MQ=255) tCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAt > 1:4811377/1‑70 (MQ=255) tCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAt > 1:2646128/1‑70 (MQ=255) aTGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATa > 1:952675/1‑69 (MQ=255) tGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcg < 1:2940977/50‑1 (MQ=255) gCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcg < 1:2895432/49‑1 (MQ=255) cAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa > 1:5574907/1‑38 (MQ=255) aaTATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcg < 1:1655501/47‑1 (MQ=255) tatatTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa < 1:2996414/61‑1 (MQ=255) atatTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa > 1:3934492/1‑59 (MQ=255) | ATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATA > Exported/1746942‑1747073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |