| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,933,917 | A→C | 13.9% | S176A (TCC→GCC) ‡ | lysS ← | lysine tRNA synthetase, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,933,917 | 0 | A | C | 13.9% | 134.9 / 19.8 | 65 | S176A (TCC→GCC) ‡ | lysS | lysine tRNA synthetase, constitutive |
| Reads supporting (aligned to +/- strand): ref base A (22/34); new base C (4/5); total (26/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
ATGAACTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCGG > Exported/1933850‑1933983 | aTGAACTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagat < 1:1327455/71‑1 (MQ=255)aTGAACTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagat < 1:806252/71‑1 (MQ=255) tGAACTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagat > 1:2874934/1‑70 (MQ=255) aaCTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagatgag < 1:4797150/71‑1 (MQ=255) aaCTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagatgag < 1:2781285/71‑1 (MQ=255) gCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGTATTCATCGTTGGAGATGAGATCg < 1:2691585/70‑1 (MQ=255) gCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATc > 1:4272755/1‑69 (MQ=255) gCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCg < 1:1712688/70‑1 (MQ=255) aaTACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagat > 1:1759664/1‑60 (MQ=255) aaTACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGAt < 1:2965534/71‑1 (MQ=255) aaTACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGAt < 1:4561809/71‑1 (MQ=255) aTACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATa < 1:4282416/71‑1 (MQ=255) aCCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGga < 1:2064901/54‑1 (MQ=255) aCCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGga < 1:5581356/54‑1 (MQ=255) ccAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGga < 1:5622482/53‑1 (MQ=255) ccAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAAc < 1:1938312/70‑1 (MQ=255) cAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgagatgaga > 1:519871/1‑59 (MQ=255) agagGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCt < 1:2294819/69‑1 (MQ=255) agagGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCt < 1:5199713/69‑1 (MQ=255) agagGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGa > 1:160235/1‑71 (MQ=255) ggATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGa < 1:4421965/71‑1 (MQ=255) gATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATaa < 1:2112150/61‑1 (MQ=255) gATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATaa < 1:3591596/61‑1 (MQ=255) tCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAg > 1:651522/1‑71 (MQ=255) tCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATAGAGATAACGCTGACGATAg > 1:2970932/1‑71 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgaga > 1:2296040/1‑44 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgaga > 1:3197227/1‑44 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGgaga > 1:1798201/1‑44 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCgag > 1:3767394/1‑54 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCga > 1:4763601/1‑53 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCga > 1:4539393/1‑53 (MQ=255) cTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTAGgaga > 1:3965284/1‑44 (MQ=255) tGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCt < 1:408962/61‑1 (MQ=255) tGCGAGCGCACTTTAAAGGGGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGAc < 1:581004/64‑1 (MQ=255) gCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAgcg > 1:607602/1‑70 (MQ=255) cGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGa > 1:1074476/1‑61 (MQ=255) gAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGAt > 1:3073694/1‑64 (MQ=255) gAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGAt > 1:4597185/1‑64 (MQ=255) tttAAAGGTGTTGCGGGATTCATCGTTGgagatgagat > 1:2297838/1‑38 (MQ=255) tttAAAGGTGTTGCGGGATTCATCGTTGgagatgagat > 1:2112524/1‑38 (MQ=255) tttAAAGGTGTTGCGGGATTCATCGTTGgagatgagat > 1:3968590/1‑38 (MQ=255) tttAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCt < 1:3431911/50‑1 (MQ=255) tttAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCt < 1:1808257/50‑1 (MQ=255) ttAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATc > 1:2134591/1‑71 (MQ=255) tAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATaa > 1:3842079/1‑44 (MQ=255) aaGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTg < 1:2590196/71‑1 (MQ=255) aGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGc < 1:1453479/71‑1 (MQ=255) ggTGTTGCGGGATTCATCGTTGGAGATTAGATCGAGATAACGCTGACGATAGCGCGCTTcc < 1:4083618/61‑1 (MQ=255) ggTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTcc < 1:785053/61‑1 (MQ=255) ggTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCa < 1:2689667/71‑1 (MQ=255) gtgtTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCa < 1:24950/70‑1 (MQ=255) tgtTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTg > 1:749180/1‑61 (MQ=255) ttGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGc < 1:2095220/70‑1 (MQ=255) ttGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGc < 1:4792362/70‑1 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGAc < 1:4563175/41‑1 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGAc < 1:129600/41‑1 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGAc < 1:3683567/41‑1 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGAc < 1:1949728/41‑1 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGt > 1:1441388/1‑71 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGt > 1:1526006/1‑71 (MQ=255) gCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGt > 1:3136849/1‑71 (MQ=255) gCGGGATTCATCGTT‑GAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTg > 1:5055691/1‑71 (MQ=255) gggATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTgg < 1:397563/71‑1 (MQ=255) gggATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTgg < 1:2935649/71‑1 (MQ=255) gggATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTgg < 1:4292694/71‑1 (MQ=255) ggATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGa < 1:94396/71‑1 (MQ=255) ggATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGa < 1:5435180/71‑1 (MQ=255) gATTTATCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTg > 1:2460759/1‑59 (MQ=255) gATTCATCGTTAGAGATGAGATCCAGATAACGCTg < 1:5420864/35‑1 (MQ=37) taTCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAAttt > 1:5341320/2‑70 (MQ=255) taTCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAAttt < 1:1652139/69‑1 (MQ=255) cATCGTAGGAGATGACATCGAGATAACGCTGACGATAGCGCGCTTcc > 1:3249342/1‑47 (MQ=38) aTCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTAt < 1:2347465/71‑1 (MQ=255) tCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAATTTATc < 1:5118446/71‑1 (MQ=255) tCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAATTTATc > 1:5022455/1‑71 (MQ=255) tCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAATTTATc > 1:1704494/1‑71 (MQ=255) tCGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAATTTATc < 1:962843/71‑1 (MQ=255) cGTTAGCGATGAGGTCCAGATAACGTTGACGATAACGGACTTCCTGATCCTGCAGACCATGGAATTTATc < 1:4640566/70‑1 (MQ=255) gTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCg > 1:2002469/1‑71 (MQ=255) gTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCg > 1:4588203/1‑71 (MQ=255) ttGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCgg < 1:3679940/71‑1 (MQ=255) ggAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCgg > 1:2110155/1‑69 (MQ=255) | ATGAACTGGCGAATACCAGAGAGGATCTGCGAGCGCACTTTAAAGGTGTTGCGGGATTCATCGTTGGAGATGAGATCGAGATAACGCTGACGATAGCGCGCTTCCTGATCCTGCAAGCCGTGGAATTTATCCGG > Exported/1933850‑1933983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |