| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,053,962 | G→A | 13.0% | intergenic (+120/+61) | cca → / ← bacA | fused tRNA nucleotidyl transferase and 2'3'‑cyclic phosphodiesterase/2'nucleotidase/phosphatase/undecaprenyl pyrophosphate phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,053,962 | 0 | G | A | 13.0% | 121.2 / 7.7 | 46 | intergenic (+120/+61) | cca/bacA | fused tRNA nucleotidyl transferase and 2'3'‑cyclic phosphodiesterase/2'nucleotidase/phosphatase/undecaprenyl pyrophosphate phosphatase |
| Reads supporting (aligned to +/- strand): ref base G (27/13); new base A (4/2); total (31/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.59e-01 | |||||||||||
CAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGA > Exported/2053894‑2054030 | cAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGaa > 1:4671056/1‑71 (MQ=255) aaCGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAAc > 1:2545792/1‑71 (MQ=255) cGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGc > 1:688297/1‑71 (MQ=255) cGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGc < 1:483099/71‑1 (MQ=255) gtttGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCtt < 1:4293478/68‑1 (MQ=11) gtttGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCtt < 1:3890482/68‑1 (MQ=11) aGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTa < 1:1025895/71‑1 (MQ=255) gTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTAt < 1:5202251/71‑1 (MQ=255) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAAc > 1:2172949/1‑62 (MQ=255) gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGGTTGCCGAATGCGGCGTAAACGCCTTATCCg > 1:384209/1‑71 (MQ=14) gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGGTTGCCGAATGCGGCGTAAACGCCTTATCCg > 1:11775/1‑71 (MQ=14) ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGcc < 1:3706205/71‑1 (MQ=255) cTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTAc > 1:4226647/1‑71 (MQ=255) gATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACg > 1:5380770/1‑70 (MQ=255) aTAAGACGCGCAAGCGTCGCATCAGGCGTTGGTTGCCGAATGAGGCGTAAACGCCTTAt > 1:243636/1‑59 (MQ=17) aTAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGc > 1:4815312/1‑70 (MQ=255) aaGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAAt > 1:1385256/1‑71 (MQ=255) aGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATc < 1:5636696/71‑1 (MQ=255) gACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCg > 1:5637974/1‑71 (MQ=255) aCGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGt > 1:3671525/1‑71 (MQ=255) cgcgCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt > 1:3079450/1‑71 (MQ=255) gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGa > 1:946860/1‑70 (MQ=255) gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGa > 1:1416237/1‑70 (MQ=255) gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGAc < 1:4357513/71‑1 (MQ=255) gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGAc < 1:5568931/71‑1 (MQ=255) acaGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 1:3716432/3‑58 (MQ=11) gCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAAc > 1:1767830/1‑39 (MQ=255) gCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCATATTCCGCCTACGCAATCGTTGACAACg > 1:2247135/1‑71 (MQ=255) gCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGcc > 1:2436290/1‑68 (MQ=255) gCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCaa < 1:394944/70‑1 (MQ=255) gCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAg > 1:4752680/1‑71 (MQ=255) aGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTa > 1:1099773/1‑44 (MQ=255) ggCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATcc < 1:1006173/70‑1 (MQ=255) gATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTa > 1:2078098/1‑71 (MQ=255) cGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCAt > 1:4484728/1‑56 (MQ=255) cGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCAt > 1:200924/1‑56 (MQ=255) ggATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGcc < 1:599692/49‑1 (MQ=255) ggATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt > 1:4384937/1‑69 (MQ=255) ggATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTc > 1:3151562/1‑70 (MQ=255) tGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAAt > 1:742562/1‑70 (MQ=255) tGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAAt > 1:3317704/1‑70 (MQ=255) gcggcgTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCaa > 1:1907140/1‑68 (MQ=255) cggcgTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTa > 1:355776/1‑70 (MQ=255) gTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGa < 1:5182873/71‑1 (MQ=255) tGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATcc < 1:2846034/47‑1 (MQ=255) tGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGa < 1:4857100/70‑1 (MQ=255) | CAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCAATTAAAAGA > Exported/2053894‑2054030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |