| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,066,377 | G→A | 29.6% | noncoding (67/76 nt) | ileX → | tRNA‑Ile |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,066,377 | 0 | G | A | 29.6% | 71.1 / 35.7 | 54 | noncoding (67/76 nt) | ileX | tRNA‑Ile |
| Reads supporting (aligned to +/- strand): ref base G (20/18); new base A (7/9); total (27/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.77e-01 | |||||||||||
CCATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATA > Exported/2066307‑2066435 | ccATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCcagcag > 1:5123016/1‑71 (MQ=255)ccATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCcagcag > 1:2263708/1‑71 (MQ=255) cATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAgg < 1:1355282/71‑1 (MQ=255) aaggCCCTTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAagg > 1:4133275/3‑71 (MQ=255) tGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAggg > 1:4645995/1‑70 (MQ=255) tttAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccacc > 1:1036519/2‑70 (MQ=255) ttAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccacca > 1:1357557/1‑70 (MQ=255) ttAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccacca > 1:422797/1‑70 (MQ=255) tAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccacca < 1:572832/69‑1 (MQ=255) aGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAg < 1:1322645/69‑1 (MQ=255) gCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGata > 1:3608732/1‑71 (MQ=255) gTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGc > 1:2997517/1‑70 (MQ=255) gTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa < 1:5442814/71‑1 (MQ=255) tGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa < 1:4858915/70‑1 (MQ=255) ggTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAgg > 1:3292934/1‑52 (MQ=255) ggTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAgg > 1:1942370/1‑52 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCaaa < 1:1784604/70‑1 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCaaa < 1:4865415/70‑1 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAg > 1:3068878/1‑71 (MQ=255) gagCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:2454751/70‑1 (MQ=255) cAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGAtata > 1:3358227/1‑58 (MQ=255) ggCTACTCATAATCGCTTGGGCGCTGGTTCAAGTCCAGGAGGGGCCACCAGATAAAGCAAAGGCTGACga < 1:351172/70‑1 (MQ=255) gCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGa < 1:583191/51‑1 (MQ=255) cTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccac < 1:1313762/43‑1 (MQ=255) cATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGccacca > 1:1125260/1‑43 (MQ=255) cATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:3372441/46‑1 (MQ=38) cATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:4674033/46‑1 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGt > 1:3083097/1‑70 (MQ=255) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:1905981/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:3647260/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:928675/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:2931317/45‑1 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:1787415/45‑1 (MQ=38) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGaaa < 1:1485613/65‑1 (MQ=255) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatca > 1:4948363/1‑44 (MQ=37) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGACACCAAatca > 1:1467686/1‑44 (MQ=37) aTCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGc > 1:1375897/1‑71 (MQ=255) aTCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGcca > 1:983717/1‑36 (MQ=255) cTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCcttt > 1:5351952/1‑71 (MQ=255) cTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCcttt > 1:5207641/1‑71 (MQ=255) ggTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:5086855/47‑1 (MQ=255) gTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCg < 1:5251642/58‑1 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:387323/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:2780096/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:1676484/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGaa < 1:4726104/52‑1 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:3801884/43‑1 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGATGAGAAATCGTCAGc > 1:4477884/1‑60 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGc > 1:4036223/1‑60 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa > 1:695421/1‑35 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGATTTCTCGTCAGc > 1:2943128/1‑58 (MQ=25) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGATTTCTCGTCAGc > 1:1805149/1‑58 (MQ=25) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAAt > 1:2579654/1‑51 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta > 1:2800940/1‑71 (MQ=255) gTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta < 1:1002097/69‑1 (MQ=255) ttCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:4517935/44‑1 (MQ=255) tCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTc > 1:1682848/1‑51 (MQ=255) tCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTtatata > 1:6062/1‑71 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:3275010/38‑1 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:5636818/38‑1 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta < 1:1357507/62‑1 (MQ=255) cagcagGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCa > 1:1614580/1‑45 (MQ=255) cagcagGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCa > 1:2336216/1‑45 (MQ=255) | CCATGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATA > Exported/2066307‑2066435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |