| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,066,387 | G→A | 17.3% | intergenic (+1/+53) | ileX → / ← yqjH | tRNA‑Ile/predicted siderophore interacting protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,066,387 | 0 | G | A | 17.3% | 113.9 / 15.3 | 52 | intergenic (+1/+53) | ileX/yqjH | tRNA‑Ile/predicted siderophore interacting protein |
| Reads supporting (aligned to +/- strand): ref base G (26/17); new base A (2/7); total (28/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 | |||||||||||
AGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGCCAG > Exported/2066319‑2066455 | aGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAg < 1:1322645/69‑1 (MQ=255) gCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGata > 1:3608732/1‑71 (MQ=255) gTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGc > 1:2997517/1‑70 (MQ=255) gTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa < 1:5442814/71‑1 (MQ=255) tGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa < 1:4858915/70‑1 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCaaa < 1:4865415/70‑1 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCaaa < 1:1784604/70‑1 (MQ=255) gTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAg > 1:3068878/1‑71 (MQ=255) gagCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:2454751/70‑1 (MQ=255) cAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGAtata > 1:3358227/1‑58 (MQ=255) ggCTACTCATAATCGCTTGGGCGCTGGTTCAAGTCCAGGAGGGGCCACCAGATAAAGCAAAGGCTGACga < 1:351172/70‑1 (MQ=255) gCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGa < 1:583191/51‑1 (MQ=255) cATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:4674033/46‑1 (MQ=38) cATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:3372441/46‑1 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGt > 1:3083097/1‑70 (MQ=255) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:1905981/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:928675/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatc < 1:3647260/46‑2 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:1787415/45‑1 (MQ=38) aTAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAat < 1:2931317/45‑1 (MQ=38) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGaaa < 1:1485613/65‑1 (MQ=255) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAatca > 1:4948363/1‑44 (MQ=37) tAATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGACACCAAatca > 1:1467686/1‑44 (MQ=37) aTCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGc > 1:1375897/1‑71 (MQ=255) cTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCcttt > 1:5207641/1‑71 (MQ=255) cTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCcttt > 1:5351952/1‑71 (MQ=255) ggTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:5086855/47‑1 (MQ=255) gTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCg < 1:5251642/58‑1 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:1676484/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:2780096/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAgg > 1:387323/1‑42 (MQ=255) cGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGaa < 1:4726104/52‑1 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCt < 1:3801884/43‑1 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGATGAGAAATCGTCAGc > 1:4477884/1‑60 (MQ=255) gCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGc > 1:4036223/1‑60 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCa > 1:695421/1‑35 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGATTTCTCGTCAGc > 1:1805149/1‑58 (MQ=25) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGATTTCTCGTCAGc > 1:2943128/1‑58 (MQ=25) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAAt > 1:2579654/1‑51 (MQ=255) tGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta > 1:2800940/1‑71 (MQ=255) gTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta < 1:1002097/69‑1 (MQ=255) ttCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:4517935/44‑1 (MQ=255) tCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTc > 1:1682848/1‑51 (MQ=255) tCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTtatata > 1:6062/1‑71 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:3275010/38‑1 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACgag < 1:5636818/38‑1 (MQ=255) tCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTta < 1:1357507/62‑1 (MQ=255) cagcagGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCa > 1:1614580/1‑45 (MQ=255) cagcagGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCa > 1:2336216/1‑45 (MQ=255) ccaGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGc > 1:2627631/1‑69 (MQ=255) caGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGCCAg > 1:2717380/1‑71 (MQ=255) aGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGCCAg > 1:3792126/1‑70 (MQ=255) aGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGCCAg > 1:3785504/1‑70 (MQ=255) | AGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTTTATATATCAGTTACTTTGCGTGCCAG > Exported/2066319‑2066455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |