| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,087,666 | C→T | 79.0% | T54I (ACC→ATC) | yhaH → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,087,666 | 0 | C | T | 79.0% | 115.8 / 26.9 | 62 | T54I (ACC→ATC) | yhaH | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (6/7); new base T (24/25); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01 | |||||||||||
ATCTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCAC > Exported/2087599‑2087733 | atcTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt > 1:1187893/1‑71 (MQ=255)atcTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt < 1:3187750/71‑1 (MQ=255) tcTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt < 1:3774513/70‑1 (MQ=255) tcTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt < 1:2280484/70‑1 (MQ=255) cTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTga > 1:1358747/1‑71 (MQ=255) tttACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTga > 1:285275/1‑70 (MQ=255) ttACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTgac > 1:2607582/1‑70 (MQ=255) tACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTgac < 1:4673653/69‑1 (MQ=255) cGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACa < 1:3046039/71‑1 (MQ=255) gTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTgacgac < 1:3068386/69‑1 (MQ=255) gTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTgacgac < 1:5321452/69‑1 (MQ=255) gTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACaa < 1:1229606/71‑1 (MQ=255) tCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACaa > 1:1258145/1‑69 (MQ=255) gTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACaa < 1:2021288/67‑1 (MQ=255) cTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACgg < 1:4142214/71‑1 (MQ=255) ggCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTAtt < 1:648000/71‑1 (MQ=255) gctgctGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCTTCCTg < 1:4869337/52‑1 (MQ=39) ctgcttGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCTAAGGCATCCTgacgac < 1:5491637/56‑1 (MQ=255) ctgctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCt < 1:3627452/71‑1 (MQ=255) gctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt < 1:2178460/48‑1 (MQ=255) gctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCt < 1:3135852/48‑1 (MQ=255) gctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACa < 1:3500164/55‑1 (MQ=255) gctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACa < 1:2716467/55‑1 (MQ=255) ctgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTgg < 1:1812278/70‑1 (MQ=255) tgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAAt > 1:3898120/1‑55 (MQ=255) tgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAAt > 1:5563733/1‑55 (MQ=255) tgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGgtg > 1:5213266/1‑71 (MQ=255) tgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGgtg > 1:3242275/1‑71 (MQ=255) tgGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGgtg > 1:3000439/1‑71 (MQ=255) ggATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGgtgt > 1:1723163/1‑71 (MQ=255) tAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTg < 1:5294514/43‑1 (MQ=255) tAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGtttt < 1:2315045/71‑1 (MQ=255) tAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGtttt < 1:4412364/71‑1 (MQ=255) aaaaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACg > 1:2348870/1‑55 (MQ=255) aaaaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACg > 1:353590/1‑55 (MQ=255) aaaaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACg > 1:3646611/1‑55 (MQ=255) aaaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTa > 1:4723063/1‑71 (MQ=255) aaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTga > 1:2445160/1‑41 (MQ=255) aaTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTga > 1:3726131/1‑41 (MQ=255) aTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGgtgt > 1:5176244/1‑64 (MQ=255) aTGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGgtgt > 1:5490251/1‑64 (MQ=255) tGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCg > 1:1967670/1‑71 (MQ=255) ttAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCgtg < 1:1221765/71‑1 (MQ=255) ttAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCgtg < 1:1656680/71‑1 (MQ=255) aGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCgtggt > 1:4076421/1‑71 (MQ=255) aGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTa < 1:2316346/50‑1 (MQ=255) ggCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCgtggtg < 1:5102127/71‑1 (MQ=255) ggCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGttttt > 1:2022541/1‑58 (MQ=255) cgcgCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCa < 1:4942969/71‑1 (MQ=255) gcgcTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAg > 1:1573596/1‑71 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTa > 1:1324906/1‑39 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTa > 1:1493031/1‑39 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTa > 1:1559459/1‑39 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTa > 1:1911577/1‑39 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAg < 1:864778/71‑1 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAg < 1:5368521/71‑1 (MQ=255) gcgcTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAg < 1:2040506/71‑1 (MQ=255) gcTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGt < 1:596385/70‑1 (MQ=255) ggtggCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTAc > 1:2033228/1‑49 (MQ=255) gCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTccgccg < 1:2810014/70‑1 (MQ=255) cGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTAc > 1:3774137/1‑44 (MQ=255) gCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCAc > 1:4979097/1‑71 (MQ=255) | ATCTTTACGTTCGTGCTGGGGCTGCTGGATAAAATGTTAGGCTGGCAACGCGCTGGTGGCGAAGGCACCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCAC > Exported/2087599‑2087733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |