| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,094,813 | A→G | 9.7% | G13G (GGT→GGC) | tdcG ← | L‑serine dehydratase 3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,094,813 | 0 | A | G | 9.7% | 334.1 / 19.9 | 123 | G13G (GGT→GGC) | tdcG | L‑serine dehydratase 3 |
| Reads supporting (aligned to +/- strand): ref base A (47/64); new base G (8/4); total (55/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
Only 100 of 124 total aligned reads displayed.
CTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAA > Exported/2094748‑2094881 | cTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCaa < 1:4652208/70‑1 (MQ=255)cTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAAt < 1:4763655/71‑1 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc > 1:5202564/1‑70 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc < 1:1358814/70‑1 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGAACCAATcc > 1:4056668/1‑70 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCACACGGTATGCGAACTGGAGGGACCAATcc > 1:491368/1‑70 (MQ=255) tCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:4121931/71‑1 (MQ=255) tCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGa > 1:3134508/1‑70 (MQ=255) aaaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATc < 1:5076281/71‑1 (MQ=255) aaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1802592/71‑1 (MQ=255) aaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:3942990/71‑1 (MQ=255) aCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4506995/70‑1 (MQ=255) aCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGa < 1:218863/71‑1 (MQ=255) tttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAAt > 1:4217547/1‑49 (MQ=255) ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:5202255/1‑71 (MQ=255) ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:2724242/1‑71 (MQ=255) tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAt > 1:3459377/1‑53 (MQ=255) tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAt > 1:5331385/1‑53 (MQ=255) cGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACt < 1:4448373/70‑1 (MQ=255) ggCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTaa < 1:3967628/71‑1 (MQ=255) gctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAAt > 1:3441019/4‑71 (MQ=255) ctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAAta > 1:4994076/3‑62 (MQ=255) ctttcattGGTCCAACGGTATGAGAACTGGAAGGGCAAATGCCGATTTTGAAAata > 1:2413606/3‑56 (MQ=255) attcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCa > 1:1953523/1‑71 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:3304151/50‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:2567559/50‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4444206/57‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:5178284/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4937353/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4988320/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:2780132/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4680636/61‑1 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATc < 1:201504/55‑1 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata > 1:4600281/1‑71 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata > 1:185753/1‑71 (MQ=255) cattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGaaaa > 1:2021963/1‑50 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCatat < 1:3673656/70‑1 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCatat < 1:3790774/70‑1 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:2866449/71‑1 (MQ=255) ttGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCatagga < 1:1323247/71‑4 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAatat > 1:335444/1‑49 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:3137799/1‑47 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCca < 1:1537781/70‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGa < 1:697124/39‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4611387/47‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACAccc > 1:5661671/1‑71 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACAcc > 1:4446386/1‑70 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTg < 1:4752548/37‑1 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTg < 1:5688508/37‑1 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:5219107/1‑42 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCt > 1:3152767/1‑71 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:745586/1‑40 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:4065286/1‑49 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCtg > 1:5020014/1‑70 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:4042463/37‑1 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc > 1:3286851/1‑61 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg < 1:4705420/71‑1 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg < 1:2278327/71‑1 (MQ=255) cGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAat < 1:5658574/40‑1 (MQ=16) ggTATGAGAACTGGAAGGGCCAATGCCGATTTTGaaaa > 1:3166002/1‑38 (MQ=16) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:5399223/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:4926920/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:663403/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:1508416/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:1046720/1‑38 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa < 1:4223379/71‑1 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa < 1:2819036/71‑1 (MQ=255) tGCGAACTGGAGGGACCAATCCCAATTTTGAAAat < 1:3104218/35‑1 (MQ=255) tGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa > 1:834518/1‑41 (MQ=255) gCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1744917/38‑1 (MQ=255) gCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:4857633/55‑1 (MQ=255) cGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:3115342/37‑1 (MQ=255) cGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGcc > 1:2376258/1‑71 (MQ=255) gAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa > 1:927602/1‑38 (MQ=255) gAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCa > 1:5605382/1‑49 (MQ=19) aaCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg < 1:4262326/62‑1 (MQ=255) aaCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg < 1:217615/62‑1 (MQ=255) aaCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGt > 1:468979/1‑71 (MQ=255) aaCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGt > 1:2702154/1‑71 (MQ=255) aaCTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTaa < 1:4230516/45‑1 (MQ=16) aCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt < 1:531360/71‑1 (MQ=255) aCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGt < 1:1502071/70‑1 (MQ=255) cTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAAt < 1:1651229/44‑1 (MQ=255) cTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAAt < 1:236812/44‑1 (MQ=255) cTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt > 1:4034579/1‑70 (MQ=255) tGGAGGGACCAATCCCAATTTTGAAAATATCGAATGc < 1:1646663/37‑1 (MQ=255) tGGAGGGACCAATCCCAATTTTGAAAATATCGAATGc < 1:1482948/37‑1 (MQ=255) ggAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATc < 1:4972811/43‑1 (MQ=255) ggAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAg > 1:2716294/1‑71 (MQ=255) gAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATc > 1:1207226/1‑42 (MQ=255) gAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAg < 1:180410/70‑1 (MQ=255) gAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGt > 1:1683090/1‑71 (MQ=255) gggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa > 1:349613/1‑57 (MQ=255) gggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTg > 1:961928/1‑70 (MQ=255) gggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGa < 1:2657072/71‑1 (MQ=255) ggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt < 1:2616037/64‑1 (MQ=255) ggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt < 1:598908/64‑1 (MQ=255) ggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGa < 1:5457586/70‑1 (MQ=255) gACCAATCCCAATTTTGAAAATATCGAATGCACTaa > 1:100761/1‑36 (MQ=255) aCCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCa > 1:890098/1‑64 (MQ=255) | CTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAA > Exported/2094748‑2094881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |