| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,096,628 | C→T | 8.6% | W104* (TGG→TAG) ‡ | garK ← | glycerate kinase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,096,628 | 0 | C | T | 8.6% | 162.3 / 4.9 | 58 | W104* (TGG→TAG) ‡ | garK | glycerate kinase I |
| Reads supporting (aligned to +/- strand): ref base C (32/21); new base T (2/3); total (34/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
TACCAGCTCCAGCCCACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGC > Exported/2096561‑2096698 | tACCAGCTCCAGCCCACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAAc < 1:602647/71‑1 (MQ=255) cAGCTCCAGCCCACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTgg < 1:3979976/71‑1 (MQ=255) tCCAGCCCACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCaa > 1:2957591/1‑63 (MQ=255) cAGCCCACTGGCGGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCa < 1:2768444/71‑1 (MQ=255) ccACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACttt < 1:506739/71‑1 (MQ=255) aCTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCa < 1:2198443/54‑1 (MQ=255) cTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATccccc < 1:4667717/52‑1 (MQ=255) cTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATccccc < 1:1745855/52‑1 (MQ=255) cTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTtctc > 1:3926480/1‑71 (MQ=255) cTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCCGAGATccccc < 1:179563/52‑1 (MQ=255) tGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCg > 1:4799295/1‑71 (MQ=255) tGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCg > 1:3593843/1‑71 (MQ=255) ggCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCaa > 1:4515923/1‑52 (MQ=255) ggCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCaa > 1:3957323/1‑52 (MQ=255) ggCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAAc > 1:2219952/1‑53 (MQ=255) ggCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGc > 1:2411976/1‑71 (MQ=255) gctgccgccATCTCAATCACCGCCGTTTTCCCGTCGCCGGTAAGGCCATAAAAAGCATTCACTTTTTCGcc > 1:697326/4‑71 (MQ=255) gctgccgccATCTCAATCACCGCCGTTTTCCCGTCGCCGGTAAGGCCATAAAAAGCATTCACTTTTTCGcc > 1:786951/4‑71 (MQ=255) ctgccgccATCTCAATCACCGCCGTTTTCCCGTCGCCGGTAAGGCCATAAAAAGCATTCACTTTTTCGcc < 1:5535532/68‑1 (MQ=255) ccgccgccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTgg < 1:395542/54‑1 (MQ=255) ccgccgccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGccc < 1:3151299/71‑1 (MQ=255) ccgccATCTCAATCACCGCCGTTTTCCCGTCGCCGGTAAGGCCATAAAAAGCATTCACTTTTTCGCCCa < 1:526871/69‑1 (MQ=255) cgccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATccccc < 1:3167975/44‑1 (MQ=255) cgccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATccccc < 1:5388770/44‑1 (MQ=255) cgccATCTCAATCACCGCCGTTTTCCCGTCGCCGGTAAGGCCATAAAAAGCATTCACTTTTTCGCCCATCg < 1:5037709/71‑1 (MQ=255) gccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAAc > 1:5606833/1‑46 (MQ=255) ccATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGc > 1:433689/1‑71 (MQ=255) tttCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCt > 1:5273455/1‑71 (MQ=255) ttCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTg > 1:5572796/1‑71 (MQ=255) tCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCAtt < 1:5260805/47‑1 (MQ=255) tCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTtct > 1:5192297/1‑55 (MQ=255) tCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTtc > 1:3790962/1‑54 (MQ=255) aTAAACGCGGTTTTGACATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAAc > 1:3670230/1‑71 (MQ=255) aTAAACGCGGTTTTGACATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAAc > 1:3663530/1‑71 (MQ=255) tAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAg > 1:3800223/1‑58 (MQ=255) aaCGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCa < 1:4018471/71‑1 (MQ=255) cgcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACt > 1:4415560/1‑43 (MQ=255) cgcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACt > 1:4705379/1‑43 (MQ=255) gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTtct > 1:1380603/1‑46 (MQ=255) gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTtct > 1:922753/1‑46 (MQ=255) cgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCg < 1:2474521/71‑1 (MQ=255) tttGCCATCGCCGGAGATCCCCCAACTGGCATTCACttt < 1:2655758/39‑1 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAg > 1:976787/1‑47 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGcc > 1:4816747/1‑52 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGa < 1:4347880/69‑1 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGa < 1:660612/69‑1 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGAc < 1:1676490/70‑1 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGAc < 1:3019747/70‑1 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACg > 1:3011316/1‑71 (MQ=255) ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTATCGCCCAGCGGCCCTGTAACCCAGGCGTGa < 1:5476708/69‑1 (MQ=255) ttGCCAGCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACg > 1:737594/1‑71 (MQ=255) tGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGt > 1:1211212/1‑71 (MQ=255) tGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGt > 1:5274956/1‑71 (MQ=255) gCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACg > 1:592681/1‑69 (MQ=255) gCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGtt > 1:4407448/1‑71 (MQ=255) tCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCg < 1:102826/60‑1 (MQ=255) gCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTaa > 1:2216563/1‑50 (MQ=255) ggAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCt < 1:1456238/71‑1 (MQ=255) ggAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCt < 1:4734987/71‑1 (MQ=255) gagaTCCCCCAACTGGCATTCACTTTCTCGCCCATCGGCCCTGt < 1:5020226/44‑1 (MQ=255) gagaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTg > 1:3797718/1‑71 (MQ=255) gaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGa > 1:2952483/1‑55 (MQ=255) aTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGt < 1:1443069/71‑1 (MQ=255) cccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGt < 1:851536/48‑1 (MQ=255) cccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGt < 1:4788619/48‑1 (MQ=255) cccAACTGGCATTCACTTTCTCGCCCAGAGGCCCTGTAACCCAGGCGt < 1:3133575/48‑1 (MQ=255) cAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTaa > 1:112187/1‑37 (MQ=255) cAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGc < 1:3056159/71‑1 (MQ=255) | TACCAGCTCCAGCCCACTGGCCGCCGCCATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGC > Exported/2096561‑2096698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |