Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | Exported | 2,130,614 | A→G | 32.7% | F97F (TTT→TTC) | mtr ← | tryptophan transporter of high affinity |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | Exported | 2,130,614 | 0 | A | G | 32.7% | 140.0 / 97.0 | 116 | F97F (TTT→TTC) | mtr | tryptophan transporter of high affinity |
Reads supporting (aligned to +/- strand): ref base A (39/39); new base G (20/18); total (59/57) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.45e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
Only 100 of 131 total aligned reads displayed.
TCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAA > Exported/2130546‑2130683 | tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca > 1:4181047/1‑69 (MQ=255) aaGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt < 1:1850097/71‑1 (MQ=255) ggTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:635539/71‑1 (MQ=255) ggTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:2725584/71‑1 (MQ=255) gtgtGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1183978/71‑1 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca < 1:2728283/59‑1 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt > 1:838448/1‑63 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:3914307/1‑71 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:3606152/62‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:5352501/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:4577236/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:2573442/71‑1 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACgaa > 1:4315429/3‑52 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:4399599/59‑2 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa < 1:2464514/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2594640/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:126007/61‑1 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:5186317/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1718479/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:4173012/71‑2 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaa < 1:1585121/59‑1 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2605545/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2932335/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:4458215/1‑70 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:3640919/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:2291876/1‑59 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCa > 1:1514809/1‑70 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAc > 1:1087905/1‑71 (MQ=255) aCCATTAGCAGAGATATAGGCATAAGTGATGATATAGAGAACGAAGGCAACggt < 1:2002172/54‑2 (MQ=255) aCCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGc < 1:2124470/48‑1 (MQ=255) aCCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:2605608/54‑2 (MQ=255) ccACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGtt < 1:648042/71‑1 (MQ=255) cACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc < 1:4121138/71‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:1466945/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2089049/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:2427702/1‑69 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGc > 1:4870493/1‑71 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGc > 1:4944555/1‑71 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:5219831/2‑44 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1574932/2‑44 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2620165/2‑44 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGa < 1:1761793/58‑1 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:2682723/1‑47 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:1194759/1‑47 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:3960139/1‑47 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2351582/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4209174/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2284749/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5092420/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAAAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5638411/3‑63 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:2791634/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:3938836/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:1084562/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGcc > 1:1800618/1‑71 (MQ=255) ataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGccc < 1:3340983/70‑1 (MQ=255) ataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGcc < 1:5230412/69‑1 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:1024268/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:3971318/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:503752/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:3792709/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:652054/50‑2 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1651353/50‑2 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:1468136/1‑58 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4705894/1‑58 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:2967980/1‑42 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:3726080/1‑42 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc < 1:2449244/49‑1 (MQ=255) ggCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:5040106/36‑2 (MQ=16) ggCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:1600465/1‑38 (MQ=12) gCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCa > 1:3476297/1‑70 (MQ=255) gCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCa > 1:2994315/1‑70 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2542552/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:3513886/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATc > 1:389185/1‑71 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:4955361/1‑49 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCttt < 1:1562379/57‑1 (MQ=255) gTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCtt < 1:4258585/70‑1 (MQ=255) cAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCCGCAAATCTTTg > 1:2796383/1‑70 (MQ=255) aGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGt > 1:3723559/1‑71 (MQ=255) ggATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg < 1:4305190/71‑1 (MQ=255) gATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:2813722/71‑1 (MQ=255) gATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa > 1:5392089/1‑71 (MQ=255) atatAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGAt < 1:2089740/71‑1 (MQ=255) tataGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATg > 1:1344534/1‑71 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg > 1:1008746/1‑66 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg < 1:841671/66‑1 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg > 1:2056723/1‑66 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:5029024/67‑1 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:5022463/67‑1 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:3855934/67‑1 (MQ=255) gagCACATAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:2824126/65‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCATATCttt < 1:11791/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCttt < 1:4053417/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCttt < 1:1267016/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGgtg > 1:836607/1‑70 (MQ=255) gCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTgg > 1:4798413/1‑60 (MQ=255) cacaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:4613688/71‑1 (MQ=255) cacaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:3111314/71‑1 (MQ=255) acaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:3226932/70‑1 (MQ=255) caAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATg < 1:3569765/62‑1 (MQ=255) | TCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAA > Exported/2130546‑2130683 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |