| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,130,640 | C→T | 16.4% | V89M (GTG→ATG) ‡ | mtr ← | tryptophan transporter of high affinity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,130,640 | 0 | C | T | 16.4% | 294.7 / 42.2 | 128 | V89M (GTG→ATG) ‡ | mtr | tryptophan transporter of high affinity |
| Reads supporting (aligned to +/- strand): ref base C (49/58); new base T (14/7); total (63/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.74e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 133 total aligned reads displayed.
GAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTA > Exported/2130570‑2130710 | gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAc > 1:1087905/1‑71 (MQ=255) ccACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGtt < 1:648042/71‑1 (MQ=255) cACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc < 1:4121138/71‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2089049/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:1466945/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:2427702/1‑69 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGc > 1:4944555/1‑71 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGc > 1:4870493/1‑71 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2284749/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2351582/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2501159/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4209174/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5092420/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAAAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5638411/3‑63 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:3938836/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:2791634/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:1084562/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGcc < 1:3590723/71‑1 (MQ=255) tataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGccc < 1:2750719/71‑1 (MQ=255) ataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGccc < 1:3340983/70‑1 (MQ=255) ataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGcc < 1:5230412/69‑1 (MQ=255) taGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAg > 1:17965/1‑71 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4705894/1‑58 (MQ=255) gCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCa > 1:2994315/1‑70 (MQ=255) gCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCa > 1:3476297/1‑70 (MQ=255) aTAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAAt < 1:5670630/71‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2542552/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:1523296/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:3513886/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATc > 1:389185/1‑71 (MQ=255) aGGTCAGGATATAGAGCACAAAGGCGATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCt > 1:2905092/1‑71 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:4955361/1‑49 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:2629588/1‑49 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACAACGTTc > 1:5291231/1‑49 (MQ=255) cAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCCGCAAATCTTTg > 1:2796383/1‑70 (MQ=255) aGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGt > 1:3723559/1‑71 (MQ=255) ggATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg < 1:4305190/71‑1 (MQ=255) gATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa > 1:5392089/1‑71 (MQ=255) atatAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGAt < 1:2089740/71‑1 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg > 1:1008746/1‑66 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTg > 1:2056723/1‑66 (MQ=255) taGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:5029024/67‑1 (MQ=255) gagCACATAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa < 1:2824126/65‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCttt < 1:1146724/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCttt < 1:4053417/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCttt < 1:1267016/60‑1 (MQ=255) gagCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGgtg > 1:836607/1‑70 (MQ=255) cacaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:3111314/71‑1 (MQ=255) cacaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:4613688/71‑1 (MQ=255) acgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaa < 1:4131665/67‑1 (MQ=255) acgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaa < 1:5535236/67‑1 (MQ=255) acgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaa < 1:5010047/67‑1 (MQ=255) acaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:3226932/70‑1 (MQ=255) cgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaaaa > 1:190574/3‑71 (MQ=255) cgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaaaa > 1:1372428/3‑71 (MQ=255) cgaaGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTaaaa < 1:223424/69‑1 (MQ=255) caAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATg < 1:3569765/62‑1 (MQ=255) aaGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaaaa > 1:2756128/1‑69 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAAt > 1:5260916/1‑48 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAAt > 1:5668755/1‑48 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATc < 1:721850/49‑1 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATc < 1:1220998/49‑1 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATc < 1:4152227/49‑1 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTc > 1:4489128/1‑71 (MQ=255) aGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTc < 1:2801628/71‑1 (MQ=255) aGGCAATGGAAATGCCGTTAACCACGTTCCAGCCTTTGCCCAGCAAAt > 1:2848161/1‑48 (MQ=255) aGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTAAAACtg < 1:3774747/71‑2 (MQ=255) aGGCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTAAAACtg < 1:2681888/71‑2 (MQ=255) ggCAACGGTAATACCGCTGATAATGTTCCAGGTGTTACCGATTAAATCTTTGGTGATGGTGTTAAAACtgg < 1:2852568/71‑3 (MQ=255) gCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTg > 1:2372887/1‑51 (MQ=255) gCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa > 1:3868890/1‑55 (MQ=255) gCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGa > 1:4735662/1‑55 (MQ=255) aaTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCtt < 1:3966389/47‑1 (MQ=255) aaTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGt > 1:5439009/1‑51 (MQ=255) aaTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGt > 1:940966/1‑51 (MQ=255) aaTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGt > 1:4753208/1‑51 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCaaa > 1:1236361/1‑42 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCt < 1:4840014/45‑1 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCt < 1:3890396/45‑1 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTgg < 1:1941406/49‑1 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTgg < 1:1938430/49‑1 (MQ=255) aTGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTgg < 1:1796894/49‑1 (MQ=255) tGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCtt < 1:1311217/45‑1 (MQ=255) tGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTg > 1:3599880/1‑47 (MQ=255) tGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGt < 1:1357031/49‑1 (MQ=255) ggAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGc > 1:3105797/1‑37 (MQ=255) ggAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGc > 1:883130/1‑37 (MQ=255) ggAAATGCCGTTGACCACGTTCCAGCCTTTGCCAAGCAAATCttt > 1:1344116/1‑45 (MQ=255) aaaTGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGAtt < 1:4854646/71‑1 (MQ=255) tGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaa < 1:1296079/54‑1 (MQ=255) tGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTc < 1:1520045/69‑1 (MQ=255) gCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTg > 1:4191754/1‑70 (MQ=255) ccGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGt > 1:5087710/1‑70 (MQ=255) gTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCaaaa > 1:3957565/1‑52 (MQ=255) gTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAAcc < 1:3655996/60‑1 (MQ=255) gTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAAcc < 1:2726522/60‑1 (MQ=255) cACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGt > 1:869825/1‑71 (MQ=255) cGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGt > 1:1774955/1‑69 (MQ=255) cGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGt > 1:2991543/1‑69 (MQ=255) cGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTa < 1:1545702/71‑1 (MQ=255) | GAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTA > Exported/2130570‑2130710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |