| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,331,252 | A→C | 78.6% | intergenic (‑157/+273) | sodA ← / ← fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,331,252 | 0 | A | C | 78.6% | 219.8 / 30.1 | 92 | intergenic (‑157/+273) | sodA/fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein |
| Reads supporting (aligned to +/- strand): ref base A (14/6); new base C (29/43); total (43/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.34e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCAATGCCGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCAC > Exported/2331186‑2331320 | aTCAATGCCGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCAc > 1:625338/1‑71 (MQ=255)aTCAATGCCGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCAc > 1:3639867/1‑71 (MQ=255) ccGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTaa > 1:1609399/1‑68 (MQ=255) ccGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTaa > 1:1627777/1‑68 (MQ=255) ccGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGc < 1:1832285/71‑1 (MQ=255) ccGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGc > 1:238016/1‑71 (MQ=255) ccGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACAACTTAATGc > 1:4120493/1‑71 (MQ=255) tACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGt < 1:914299/71‑1 (MQ=255) tACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGt < 1:2354273/71‑1 (MQ=255) tACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGt < 1:1878856/71‑1 (MQ=255) ttttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTg < 1:4142604/69‑1 (MQ=255) ttttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCAc < 1:5394673/58‑1 (MQ=255) ttttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCAc < 1:4657282/58‑1 (MQ=255) ttttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACtt < 1:332194/60‑1 (MQ=255) tttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTaa < 1:1084040/61‑1 (MQ=255) ttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCaa > 1:5648226/1‑52 (MQ=255) ttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCaa > 1:2887715/1‑52 (MQ=255) ttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTaa > 1:3289638/1‑60 (MQ=255) ttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTg > 1:3975255/1‑71 (MQ=255) ttCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTg > 1:904973/1‑71 (MQ=255) aaGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAg > 1:468762/1‑70 (MQ=255) gggTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTa > 1:3763569/1‑70 (MQ=255) gTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAAt > 1:4490629/1‑71 (MQ=255) tATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACtt < 1:4603587/48‑1 (MQ=255) tATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACt < 1:3075121/47‑1 (MQ=255) tATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACt < 1:3692467/47‑1 (MQ=255) tATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATc > 1:2034377/1‑71 (MQ=255) aTGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTa < 1:2146702/48‑1 (MQ=255) tGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACtt < 1:833988/46‑1 (MQ=255) tGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGa > 1:550635/1‑71 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGt < 1:88732/52‑1 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGt < 1:3395909/52‑1 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:3481074/1‑70 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc < 1:597334/70‑1 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc < 1:2779101/70‑1 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc < 1:588385/70‑1 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCAc > 1:5680633/1‑42 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCAc > 1:4535801/1‑42 (MQ=255) gTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTaaa > 1:2705363/1‑65 (MQ=255) ttttGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGa < 1:4824989/53‑1 (MQ=255) ttttGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACaa > 1:1795100/1‑71 (MQ=255) ttGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTaa > 1:2909005/1‑43 (MQ=255) tGCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAAcg < 1:5537938/70‑1 (MQ=255) gCAGGAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGa < 1:1253521/49‑1 (MQ=255) tgAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGcc < 1:448367/50‑1 (MQ=39) ggAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGcc < 1:4701496/51‑1 (MQ=255) ggAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:3841890/71‑1 (MQ=255) ggAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:2097179/71‑1 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGa > 1:976224/1‑45 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc < 1:1464347/61‑1 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc < 1:3488160/61‑1 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:5214068/1‑61 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:1175763/1‑70 (MQ=255) gAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAAcgg < 1:4937783/66‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAg > 1:2522956/1‑51 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCaa < 1:3072336/71‑1 (MQ=255) aaaaTGACCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCaa < 1:159785/71‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAAcgg < 1:3805475/64‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAAcgg < 1:1931042/64‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAAcgg < 1:901316/64‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAAcgg < 1:1815957/64‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCaa > 1:2353203/1‑70 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:1481875/1‑59 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:3959613/1‑59 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:27763/1‑59 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGAc > 1:4818556/1‑59 (MQ=255) aaTGCCCGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCaa > 1:148248/1‑69 (MQ=255) ccGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGa < 1:4871065/71‑1 (MQ=255) ccGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGa < 1:2840703/71‑1 (MQ=255) cGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGa < 1:2957409/70‑1 (MQ=255) cGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGa < 1:5049134/70‑1 (MQ=255) cGAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGa < 1:805124/70‑1 (MQ=255) gagaTGTGAAGCAAATCACCCACTTAATGCCGTGAt > 1:3792227/1‑36 (MQ=255) gagaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGaaa < 1:4253465/71‑1 (MQ=255) agaTGTGAAGCAAATCACCCACTTAATGCCGTGAt < 1:5117195/35‑1 (MQ=255) agaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGcc < 1:2277130/39‑1 (MQ=255) gaTGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAgg > 1:5358737/1‑71 (MQ=255) tgtgAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTa < 1:448712/40‑1 (MQ=255) gtgAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTa < 1:5081081/39‑1 (MQ=255) gtgAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:5281524/1‑70 (MQ=255) tgAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTaa < 1:2015184/71‑1 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTaaa > 1:5082922/1‑40 (MQ=255) aaGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:2404480/71‑1 (MQ=255) aaGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc > 1:2342394/1‑71 (MQ=255) aaGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:257715/71‑1 (MQ=255) aaTCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCaa > 1:838772/1‑49 (MQ=255) aaTCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAAc > 1:998265/1‑50 (MQ=255) aaTCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAAc > 1:1510757/1‑50 (MQ=255) aTCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTa > 1:4734805/1‑62 (MQ=255) aTCACCCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGc < 1:4003264/71‑1 (MQ=255) tCACCCACTTAATGCCGTGATTGCCAGTAAATCGACaa > 1:4731933/1‑38 (MQ=255) tCACCCACTTAATGCCGTGATTGCCAGTAAATCGACaa > 1:4509085/1‑38 (MQ=255) tCACCCACTTAATGCCGTGATTGCCAGTAAATCGACaa > 1:3381377/1‑38 (MQ=255) cAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCAc > 1:1094501/1‑71 (MQ=255) aaCCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:5209123/43‑1 (MQ=255) aaCCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:3421951/43‑1 (MQ=255) | ATCAATGCCGTACTTTTCGTAAGGGTATGGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCAC > Exported/2331186‑2331320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |