| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,490,422 | A→G | 6.0% | E107E (GAA→GAG) | recF → | gap repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,490,422 | 0 | A | G | 6.0% | 236.8 / 4.3 | 83 | E107E (GAA→GAG) | recF | gap repair protein |
| Reads supporting (aligned to +/- strand): ref base A (38/40); new base G (3/2); total (41/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
GCTTAACCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGCCCCAAA > Exported/2490352‑2490491 | gCTTAACCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGaa > 1:2962593/1‑71 (MQ=255) aaCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTgg > 1:2136791/1‑71 (MQ=255) aaCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTgg > 1:2034583/1‑71 (MQ=255) aaCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTg < 1:1984870/70‑1 (MQ=255) aaCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTg < 1:4770967/70‑1 (MQ=255) aCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTgg > 1:4984166/1‑70 (MQ=255) aCCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGgc > 1:1320164/1‑71 (MQ=255) cAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGgcgc < 1:3577684/71‑1 (MQ=255) aaaGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCa < 1:785923/71‑1 (MQ=255) aaGACAAACAGGGCGTCAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAc > 1:1074693/1‑71 (MQ=255) gACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCt < 1:584575/71‑1 (MQ=255) gACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCt < 1:2447182/71‑1 (MQ=255) gACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCt > 1:5429478/1‑71 (MQ=255) cAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGa > 1:1714750/1‑71 (MQ=255) aaaCAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGAt > 1:2447450/1‑71 (MQ=255) aaaCAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGAt > 1:3776579/1‑71 (MQ=255) cAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAAc > 1:2731703/1‑55 (MQ=255) cAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGc > 1:270892/1‑70 (MQ=255) cAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGc > 1:4465243/1‑70 (MQ=255) aGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGcc > 1:5213531/1‑70 (MQ=255) ggCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGc < 1:4109961/67‑1 (MQ=255) ggCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGc < 1:3397314/67‑1 (MQ=255) ggCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGc < 1:3258770/67‑1 (MQ=255) gCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATg < 1:651961/71‑1 (MQ=255) gCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATg < 1:5055305/71‑1 (MQ=255) cGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGc < 1:3911793/71‑1 (MQ=255) cGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGc < 1:1911686/71‑1 (MQ=255) cGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGc < 1:4631496/71‑1 (MQ=255) gACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATgaa < 1:2589906/71‑3 (MQ=255) aCAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAg < 1:3987775/71‑1 (MQ=255) aCAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAg < 1:4818926/71‑1 (MQ=255) aGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGtt > 1:2223141/1‑71 (MQ=255) gCATAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGgcgc < 1:3181597/51‑1 (MQ=255) gCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTg < 1:2185773/71‑1 (MQ=255) cAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATg < 1:2253710/64‑1 (MQ=255) aaaGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAc > 1:3560169/1‑51 (MQ=255) aaaGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGa > 1:5543408/1‑70 (MQ=255) aaGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGAt > 1:3222839/1‑70 (MQ=255) agcccGCAGCGACGGTACAGACGGGCATAAGGGCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATaa < 1:2528336/68‑1 (MQ=255) tCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCt < 1:1348486/49‑1 (MQ=255) accGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGAt < 1:918747/60‑1 (MQ=255) tCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGAt > 1:1333118/1‑46 (MQ=255) tCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGAt > 1:573505/1‑46 (MQ=255) tCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGAt < 1:3176980/61‑1 (MQ=255) cGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCa < 1:5032303/49‑1 (MQ=255) cGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAg > 1:194331/1‑71 (MQ=255) gACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAc > 1:2928928/1‑39 (MQ=255) gACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAc > 1:5489064/1‑39 (MQ=255) gACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAc > 1:1632622/1‑39 (MQ=255) gACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATaa > 1:1185790/1‑61 (MQ=255) gACCGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAgg > 1:3269094/1‑71 (MQ=255) aCGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCa < 1:4876407/47‑1 (MQ=255) aCGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGa < 1:5416725/57‑1 (MQ=255) aCGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGa < 1:3590902/57‑1 (MQ=255) cGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCAACTGATGCCAATGc > 1:5569068/1‑50 (MQ=255) cGGTACAGACGGGCATAAAGTCGCGGAGCTGGCGCACCt > 1:2823387/1‑39 (MQ=38) cGGTACAGACGGGCATAAAGTCGCGGAGCTGGCGCACCt > 1:1756925/1‑39 (MQ=38) cGGTACAGACGGGCATAAAGTCGCGGAGCTGGCGCACCt > 1:4770837/1‑39 (MQ=38) tACAGACGGGCATAAGGTCGCGGAACTGGCGCACCt < 1:2987577/36‑1 (MQ=255) aCAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAg > 1:3491037/1‑61 (MQ=255) aCAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAg > 1:4812758/1‑61 (MQ=255) gACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGtttacttt < 1:3643135/71‑1 (MQ=255) ggCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTc < 1:1799218/71‑1 (MQ=255) ggCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTc < 1:1526110/71‑1 (MQ=255) aTAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAc < 1:2409904/71‑1 (MQ=255) tAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcg > 1:503179/1‑71 (MQ=255) tAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcg > 1:1326416/1‑71 (MQ=255) tAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcg < 1:2264923/71‑1 (MQ=255) aaGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGa < 1:1672298/50‑1 (MQ=255) aaGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcgg > 1:2575997/1‑71 (MQ=255) aaGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcgg > 1:1208613/1‑71 (MQ=255) aGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGAt < 1:1789410/40‑1 (MQ=255) aGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGAt < 1:4925006/40‑1 (MQ=255) aGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGaa > 1:5604016/1‑50 (MQ=255) aGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcggc < 1:3045665/71‑1 (MQ=255) aGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAAcggc > 1:1857838/1‑71 (MQ=255) aGGTCGCAGAACTGGCGCACCTGATGCCAATGCAGTTGATaa > 1:1440043/1‑42 (MQ=255) gTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAg < 1:5356294/46‑1 (MQ=255) tCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGttt > 1:243093/1‑53 (MQ=255) cgcgGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGcc > 1:3493140/1‑71 (MQ=255) cgGAGCTGGCGCACCTGATGCCAATGCAGCTGATAACGCCAGAAGGGttt < 1:639481/50‑1 (MQ=255) cgGAGCTGGCGCACCTGATGCCAATGCAGCTGATAACGCCAGAAGGGttt < 1:85521/50‑1 (MQ=255) cgGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGt < 1:434512/48‑1 (MQ=255) gAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGcccc > 1:5476894/1‑69 (MQ=255) aaCTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTc < 1:5434073/56‑1 (MQ=255) aaCTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGCCCCaaa > 1:2106698/1‑71 (MQ=255) aaCTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGCCCCaaa < 1:3210843/71‑1 (MQ=255) | GCTTAACCAAAGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTACAGACGGGCATAAGGTCGCGGAACTGGCGCACCTGATGCCAATGCAGTTGATAACGCCAGAAGGGTTTACTTTACTCAACGGCGGCCCCAAA > Exported/2490352‑2490491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |