| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 132,188 | A→G | 9.6% | T161A (ACA→GCA) ‡ | yadD → | predicted transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 132,188 | 0 | A | G | 9.6% | 194.2 / 9.4 | 73 | T161A (ACA→GCA) ‡ | yadD | predicted transposase |
| Reads supporting (aligned to +/- strand): ref base A (31/35); new base G (5/2); total (36/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
GTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCC > Exported/132121‑132257 | gTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCacac > 1:2322141/1‑71 (MQ=255) ttttACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACAcc > 1:4656583/1‑71 (MQ=255) aCTCGCCGGAGCTGGCGCGACTCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGa < 1:2029230/70‑1 (MQ=255) cTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt < 1:4283319/70‑1 (MQ=255) gcGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt < 1:2152463/68‑1 (MQ=255) cGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGaa < 1:3473239/71‑1 (MQ=255) gAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt < 1:1125649/63‑1 (MQ=255) cgACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAAc < 1:3049631/70‑1 (MQ=255) gcgTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACg < 1:1316281/54‑1 (MQ=255) gcgTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACg < 1:5569931/54‑1 (MQ=255) gcgTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACg < 1:5691943/54‑1 (MQ=255) gTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATcggcg < 1:3638659/71‑1 (MQ=255) tCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATcac < 1:2937474/40‑1 (MQ=255) tCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATcac < 1:5290971/40‑1 (MQ=255) tCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCTTGCAACATcggcgg < 1:3914110/71‑1 (MQ=255) cTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGaaa < 1:1689273/53‑1 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCacac > 1:5550290/1‑40 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCacac > 1:1247855/1‑40 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt > 1:1353671/1‑45 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt > 1:2034776/1‑45 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt > 1:2145813/1‑45 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGAt > 1:4939152/1‑45 (MQ=255) tataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGAt > 1:4600577/1‑71 (MQ=255) ataACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGAtt > 1:4143045/1‑71 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACCCCGGATGACGAAATCATGCAACATcg > 1:2266476/1‑61 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCaa > 1:3525250/1‑56 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATcg > 1:541766/1‑61 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATcg > 1:488148/1‑61 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGc < 1:2161053/70‑1 (MQ=255) aCAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGc < 1:3522708/70‑1 (MQ=255) cAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGa < 1:1986915/71‑1 (MQ=255) gTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGa > 1:1980737/1‑43 (MQ=255) gTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGa > 1:5162473/1‑43 (MQ=255) cTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATtctc < 1:1800412/71‑1 (MQ=255) tttCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATtctc > 1:648428/1‑70 (MQ=255) ttCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCTACATCGGCGGATTGCGATTCTCg > 1:2903375/1‑70 (MQ=255) tCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:5084483/1‑71 (MQ=255) cccGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCg < 1:4883306/68‑1 (MQ=255) ccGCTGGTGGATATCACCATCACACCGGATGACGAAAt < 1:4520174/38‑1 (MQ=255) ccGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:4287679/70‑1 (MQ=255) cGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAac < 1:3269773/69‑1 (MQ=255) cTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAAc > 1:3978847/1‑43 (MQ=255) cTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:5320433/1‑69 (MQ=255) cTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:1291540/1‑69 (MQ=255) gtggATATCACCATCACACCGGATGACGAAATCATGCAACATcggcg < 1:152848/47‑1 (MQ=255) gtggATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCa < 1:5028866/71‑1 (MQ=255) ggATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaa < 1:879856/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:3186170/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:2104096/71‑1 (MQ=255) gATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaa < 1:5527922/70‑1 (MQ=255) atatCACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTAtag < 1:3532925/48‑3 (MQ=255) atatCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCaaaa < 1:2659004/70‑1 (MQ=255) taaCCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:3366443/3‑59 (MQ=255) tCACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGct > 1:1639548/1‑46 (MQ=255) tCACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCa > 1:4331714/1‑70 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:5194850/1‑59 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:3654363/1‑59 (MQ=255) tCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta > 1:1715133/1‑59 (MQ=255) tCACAATCACACCGGATGACGAAATCATGCAACATc > 1:1642589/1‑36 (MQ=255) cACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCata > 1:4456591/1‑71 (MQ=255) cACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:3151006/1‑70 (MQ=255) cACCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCat > 1:5139991/1‑70 (MQ=255) cACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACata > 1:137935/1‑71 (MQ=255) aCCATCGTACCTGACGATGAGATCATGCAACATCGGCGTATAGCTCTGCTGGAACTGATTCAAAAGCata < 1:1682564/70‑1 (MQ=255) aCCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACatat < 1:5411175/71‑1 (MQ=255) aTCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCg < 1:4109234/71‑1 (MQ=255) tCACAGCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCg < 1:793773/48‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTg > 1:2371299/1‑39 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTg > 1:2733784/1‑39 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTg > 1:1589802/1‑39 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTg > 1:3622995/1‑39 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTg > 1:3342140/1‑39 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAacta < 1:1364574/53‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc > 1:1724271/1‑71 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:1990572/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:3733406/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGc < 1:2811198/71‑1 (MQ=255) tCACACCGGATGACGAAATCATGCAACATCGGAGGATTGCGATTCTCg < 1:3171776/48‑1 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:1469273/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:2427586/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:283599/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGaa > 1:1119891/1‑49 (MQ=255) cacaCCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGa > 1:824333/1‑48 (MQ=255) acacCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGcc < 1:5225852/70‑1 (MQ=255) acacCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGcc < 1:1456262/70‑1 (MQ=255) | GTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCATCACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTACTGCAAAAACATATTCGCC > Exported/132121‑132257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |