| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,572,487 | A→G | 84.4% | intergenic (+1255/‑524) | yibH → / → ysaB | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,572,487 | 0 | A | G | 84.4% | 146.9 / 17.3 | 64 | intergenic (+1255/‑524) | yibH/ysaB | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (6/4); new base G (26/28); total (32/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 | |||||||||||
TATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAG > Exported/2572417‑2572549 | tATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTa < 1:4029320/71‑1 (MQ=255) tCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCt < 1:3882132/71‑1 (MQ=255) aGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt > 1:3553373/1‑71 (MQ=255) ggTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTAtt > 1:5448701/1‑71 (MQ=255) ttttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTta < 1:5536577/71‑1 (MQ=255) ttCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGc > 1:94035/1‑59 (MQ=255) ttCTATAGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtat > 1:5667/1‑70 (MQ=255) tCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtata > 1:4140031/1‑70 (MQ=255) tCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtat > 1:1540419/1‑69 (MQ=255) tCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtata < 1:1227357/70‑1 (MQ=255) cTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATaa < 1:4190942/70‑1 (MQ=255) cTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATaaa > 1:978776/1‑71 (MQ=255) ttgcttgcTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAAt < 1:2211383/69‑1 (MQ=255) gcttgctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAAtgt > 1:5503763/1‑69 (MQ=255) cttgctCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTa > 1:3599723/1‑71 (MQ=255) ccGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATc < 1:5044651/48‑1 (MQ=255) ccGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATc < 1:331185/48‑1 (MQ=255) ccGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACggg > 1:1335145/1‑71 (MQ=255) ccGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACg < 1:4090185/69‑1 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTa > 1:3479412/1‑48 (MQ=255) gggTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGa > 1:519007/1‑71 (MQ=255) cATTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGattat > 1:1348344/1‑71 (MQ=255) aaTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGattat > 1:3931969/2‑71 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACa > 1:818583/1‑59 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACa > 1:383397/1‑59 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACa > 1:3542414/1‑59 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACa > 1:2467320/1‑59 (MQ=255) aTTAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGattatt < 1:3278587/71‑1 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtata < 1:4781212/48‑1 (MQ=255) ttAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAAtgtg < 1:643494/54‑1 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtata > 1:2593069/1‑46 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt < 1:4848259/70‑1 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt > 1:1243892/1‑70 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt > 1:1788047/1‑70 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt < 1:5594875/70‑1 (MQ=255) aaCATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTtata < 1:2968348/46‑1 (MQ=255) aaCATTCCAACTCCATAGACCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTAtttt > 1:5387902/1‑70 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt > 1:5627467/1‑40 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt > 1:4558943/1‑40 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTAt > 1:1848423/1‑40 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa < 1:2024440/71‑1 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa < 1:1919864/71‑1 (MQ=255) aCATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTa < 1:3337465/71‑1 (MQ=255) aTTCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACa < 1:2937136/71‑1 (MQ=255) ttCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtat < 1:1407856/41‑1 (MQ=255) tCCAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACAtt > 1:4876296/1‑71 (MQ=255) ccAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTg > 1:4888110/1‑71 (MQ=255) cAACTCCATAGGCCTTGAGGTATTGGCCATCTATTtat < 1:2583027/38‑1 (MQ=255) cAACTCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGc < 1:4614262/71‑1 (MQ=255) tCCATAGGCCTTGAGGTATTGTCCATCTATTtata < 1:3370232/35‑1 (MQ=255) tCCATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCat < 1:1584871/69‑1 (MQ=255) cATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCatat < 1:783681/69‑1 (MQ=255) cATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCAtatta > 1:897525/1‑71 (MQ=255) cATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCAtatta < 1:3183598/71‑1 (MQ=255) cATAGGCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCAtatt < 1:2374895/70‑1 (MQ=255) ggCCTTGAGGTATTGGCCATCTATTTATAAATTTGTACAACGGGGATTAtttt < 1:1947986/53‑1 (MQ=255) ggCCTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATAttgtta < 1:721863/70‑1 (MQ=255) cTTGAGGTATTGGCCATCTATTTATAAATGTGTAc < 1:217093/35‑1 (MQ=255) cTTGAGGTATTGGCCATCTATTTATAAATGTGTAc < 1:574474/35‑1 (MQ=255) cTTGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATattatt < 1:1981553/66‑1 (MQ=255) tGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTAc > 1:1598521/1‑51 (MQ=255) tGAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTAc > 1:3993435/1‑51 (MQ=255) gAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGa < 1:4009247/69‑1 (MQ=255) gAGGTATTGGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAg > 1:2666812/1‑71 (MQ=255) gAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGattat > 1:485092/1‑44 (MQ=255) | TATGCCGTCAGGTTTTCTATTGCTTGCTCCCGGGTCATTAACATTCCAACTCCATAGGCCTTGAGGTATTAGCCATCTATTTATAAATGTGTACAACGGGGATTATTTTTACATTGCATATTATTACCAGAAG > Exported/2572417‑2572549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |