| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,572,717 | C→T | 9.0% | intergenic (+1485/‑294) | yibH → / → ysaB | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,572,717 | 0 | C | T | 9.0% | 500.4 / 26.8 | 178 | intergenic (+1485/‑294) | yibH/ysaB | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (87/75); new base T (13/3); total (100/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.74e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
Only 100 of 187 total aligned reads displayed.
TAATCCCAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCC > Exported/2572647‑2572787 | aTCCCAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGccc < 1:5210802/71‑1 (MQ=255) tCCCAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGccc > 1:137772/1‑70 (MQ=255) tCCCAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCa < 1:2969901/71‑1 (MQ=255) cccAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCaa > 1:3999477/1‑71 (MQ=255) cccAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCaa > 1:4792942/1‑71 (MQ=255) ccAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACATACCTTCCAGCCCaa > 1:2296532/1‑70 (MQ=255) cAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATc > 1:73009/1‑71 (MQ=255) cAAGGGGATCGATTCCAGAAATAGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAAt > 1:55964/1‑70 (MQ=255) aaGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCg > 1:1465919/1‑71 (MQ=255) ggggATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCg > 1:2091529/1‑69 (MQ=255) gATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCa < 1:2036989/62‑1 (MQ=255) aTCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCt < 1:423499/71‑1 (MQ=255) gATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGa < 1:1099265/70‑1 (MQ=255) ccAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAgtgt < 1:4341378/70‑1 (MQ=255) ccAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAgtgt < 1:1882051/70‑1 (MQ=255) cAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTta < 1:4871295/71‑1 (MQ=255) gagaTCGGATTCAACGGATACTGATAAAAATTCCATCCCCCTTTCAGCCCAATCGGATCCTGAGTGatat < 1:1170903/67‑1 (MQ=255) gagaTCGGATTCAACGGATACTGATAAAAATTCCATCCCCCTTTCAGCCCAATCGGATCCTGAGTGatat < 1:3519381/67‑1 (MQ=255) agaTCGGATTCAACGGATACTGATAAAAATTCCATCCTCCTTTCAGCCCAATCGGATCCTGAGTGAtata > 1:4143937/3‑70 (MQ=255) aaaTCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTg > 1:2153154/1‑61 (MQ=255) aTCTGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAgt < 1:877913/62‑1 (MQ=255) aTCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCg < 1:1734648/71‑1 (MQ=255) tCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCa < 1:4050751/47‑1 (MQ=255) tCGGATTCAACGGATACTGATAAAAATTCCATCCCCCTTTCAGCCCAATCGGatc < 1:2424029/55‑3 (MQ=255) ccGGATTCAGCGGATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGAgtga < 1:4494340/62‑2 (MQ=255) ccGGATTCAACGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGc > 1:1660448/2‑71 (MQ=255) ggTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGcccc < 1:2673676/71‑1 (MQ=255) attCAGCGGATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCgg < 1:5664344/47‑1 (MQ=255) attCAGCGGATACGCATACAGACTCCATCCCCCCTCCAGCCCTATCGGGTCCTGAGTGATATACCGCCCct < 1:2205840/70‑1 (MQ=255) attCAACGGATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGat > 1:320179/2‑49 (MQ=255) ttCAACGTATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTta > 1:2577749/1‑60 (MQ=255) ttCAACGGATACTGATACATATTCCATCCACCTCTCAACCCAATCGGGTCCGGGGTGATATAcc > 1:1843433/1‑64 (MQ=255) ttCAACGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGccccag > 1:1136220/1‑69 (MQ=255) ttCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCaa < 1:2808058/43‑1 (MQ=255) ttCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCaa < 1:1049083/43‑1 (MQ=255) ttCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTta < 1:4411233/60‑1 (MQ=255) ttCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTta > 1:2413257/1‑60 (MQ=255) cAACGGATACTGATACATATTCCATCCACCTCTCAACCCAATCGGGTCCGGGGTGATATACCGCCCctgc < 1:5249456/70‑1 (MQ=255) cAACGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGatc > 1:813282/1‑46 (MQ=255) cAACGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGccccag > 1:3173499/1‑67 (MQ=255) cAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAAt > 1:3854995/1‑42 (MQ=255) cAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAAt > 1:4909787/1‑42 (MQ=255) cAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTta > 1:1947126/1‑58 (MQ=255) cAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCctgct > 1:3994771/1‑71 (MQ=255) aaaCGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAgtgt > 1:711242/2‑56 (MQ=255) aaCGGATACTGATAAAAATTCCATCCCCCTTTCAGCCCAATCGGATCCTg > 1:3002682/1‑50 (MQ=255) aaCGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAAt > 1:4998908/1‑41 (MQ=255) aaCGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCg > 1:671114/1‑43 (MQ=255) aaCGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCg > 1:3729997/1‑43 (MQ=255) aCGGATACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGCCCcagcag > 1:554642/1‑68 (MQ=255) aCGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATAc > 1:610003/1‑59 (MQ=255) ggATACTGATAAAAATTCCATCCCCCTT‑CAGCCCAATCGGATCCTGAGTGATATACCTCCCCTGCAGCggg > 1:2878568/1‑70 (MQ=255) ggATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGAgtga < 1:5222836/52‑2 (MQ=255) ggATACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGAGTGATATACCGCCCCTGCAGCgg > 1:5171066/1‑71 (MQ=255) ggATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAgtgt < 1:241324/52‑1 (MQ=255) ggATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATAc > 1:3432235/1‑57 (MQ=255) ggATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATAc > 1:1156018/1‑57 (MQ=255) gATACTGATAAAAATTCCACCTACCTTCCAGCCCAATc > 1:428937/1‑38 (MQ=255) gATACTGATAAAAATTCCACCTACCTTCCAGCCCAATc > 1:4480579/1‑38 (MQ=255) aTACTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGa > 1:3232991/1‑40 (MQ=255) aTACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGt > 1:2729850/1‑70 (MQ=255) tACTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGAg > 1:2754358/1‑46 (MQ=255) tACTGATAAAAATTCCATCCCCACTTCAGCCCAATCGGATCCTGAg > 1:4576623/1‑46 (MQ=255) tACTGATAAAAATTCCACCTACCTTCCAGCCCAAt < 1:5058875/35‑1 (MQ=255) aCTGATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGa > 1:240013/1‑44 (MQ=255) cTGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGat < 1:1049524/38‑2 (MQ=16) cTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGa > 1:1606250/1‑43 (MQ=255) cTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGccc > 1:4294827/1‑57 (MQ=255) tGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCt < 1:3630668/40‑1 (MQ=255) tGATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCt < 1:2519766/40‑1 (MQ=255) tGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGtt < 1:4968894/67‑1 (MQ=255) gATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGCCCCAGCAGCgg > 1:4979797/1‑64 (MQ=255) gATAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGCCCCAGCAGCgg > 1:1934447/1‑64 (MQ=255) gATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCt < 1:1263718/39‑1 (MQ=16) gATAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCt < 1:5332975/39‑1 (MQ=16) aTAAAAATTCCATCCCCCTTTCAGCCCAATCGGATCCTGAGTGAtatat > 1:1130632/1‑48 (MQ=255) aTAAAAATTCCATCCCCCTTTCAGCCCAATCGGATCCTGAGTGAtata > 1:3729263/1‑48 (MQ=255) aTAAAAATTCCATCCCCCCTTCAGCCCAATCGGATCCTGa > 1:4320881/1‑40 (MQ=255) tAAAAATTCCATCCCCCCTTCAGTCCAATCGGATCCTGAGTGATATACCGCCCCagcagc < 1:1807372/60‑1 (MQ=255) aaaaaTTCCATCCCCCCTTCAGCCCAATCGGATCCTGAGTGatat > 1:4746828/1‑45 (MQ=255) aaaaTTCCATCACCCCTTCAGCCCAATCGGATCCTGAGTGAtata > 1:5468939/1‑45 (MQ=255) aaTTCCATCCCCCCTTCAGCCCAATCGGATCCTGAGTGAta > 1:1699164/1‑41 (MQ=255) aaTTCCATCCCCCCTTCAGCCCAATCGGATCCTGAGTGATATAcctc < 1:4132582/47‑3 (MQ=255) cACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGataat < 1:967637/70‑1 (MQ=255) acctacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCtgctgc < 1:309814/50‑1 (MQ=255) cctacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGt < 1:2116581/71‑1 (MQ=255) ctacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCtgctgc < 1:399991/48‑1 (MQ=255) ctacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGt > 1:2631853/1‑70 (MQ=255) tacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCctgc < 1:5145287/44‑1 (MQ=255) tacctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCctgc < 1:158107/44‑1 (MQ=255) acctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTta > 1:2439551/1‑70 (MQ=255) cctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGa < 1:3796863/60‑1 (MQ=255) cctTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTta < 1:5310379/69‑1 (MQ=255) tcAGCCCAATCGGATCCTGAGTGATATACCGcccc < 1:3332834/34‑1 (MQ=37) ccAGCCCAATCGGAGCCTGAGTGTTATACCGCCCctgc > 1:274979/1‑38 (MQ=255) ccAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTTCTGCGGTTAATGTTACCGATAATAGTTATAGt < 1:5113808/69‑1 (MQ=255) cAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTa > 1:2144679/1‑69 (MQ=255) cAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTAc < 1:2124118/70‑1 (MQ=255) ccccATCGGGTCCTGAGTAATATACCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGcc < 1:1764035/71‑1 (MQ=255) cccAATCGGGTCCGGGGTGATATACCGCCCCTGCAACGGATCGTAGTGCCGGTGACGGTTATAGTACAGcc > 1:64164/1‑71 (MQ=255) | TAATCCCAAGGGGATCGATTCCAGAAATCGGGTTCAACGGATACTGATAAAAATTCCACCTACCTTCCAGCCCAATCGGAGCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCC > Exported/2572647‑2572787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |