| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,572,795 | A→C | 11.3% | intergenic (+1563/‑216) | yibH → / → ysaB | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,572,795 | 0 | A | C | 11.3% | 139.4 / 13.6 | 62 | intergenic (+1563/‑216) | yibH/ysaB | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (30/25); new base C (4/3); total (34/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCTTCTGTGTCTCTGTATCTGGTTA > Exported/2572727‑2572857 | tccTGAGTAATATACCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATtcctc < 1:2827269/70‑1 (MQ=255)tccTGAGTAATATACCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATtcctc < 1:5675327/70‑1 (MQ=255) ccTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatca > 1:1458927/1‑71 (MQ=255) cTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:1215386/71‑1 (MQ=255) tGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat > 1:4255053/1‑70 (MQ=255) tGAGTAATATACCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATtcctcat > 1:4848809/1‑70 (MQ=255) gggtgaTATACCGCCCCTGCAACGGATCGTAGTGCCGGTGACGGTTATAGTACAGCCCCGACtcctcatca < 1:3320751/69‑1 (MQ=255) ggtgaTATACCGCCCCTGCAACGGATCGTAGTGCCGGTGACGGTTATAGTACAGCCCCGACTcctcatcat < 1:3500579/70‑1 (MQ=255) aGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:4024081/70‑1 (MQ=255) aGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca > 1:4364238/1‑70 (MQ=255) aGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTcatcatcat < 1:9140/71‑1 (MQ=255) gtgaTATACCGCCCCTGCAACGGATCGTAGTGCCGGTGACGGTTATAGTACAGCCCCGACtcctcat < 1:4888930/67‑1 (MQ=255) taatataCCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATtcctcat < 1:1756528/63‑1 (MQ=255) gtTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:3995348/65‑1 (MQ=255) gtTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:3750460/65‑1 (MQ=255) aatataCCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATTCCTCATCAtgct > 1:3625482/3‑71 (MQ=255) ttATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTcatcatcat < 1:1729571/67‑1 (MQ=255) ttATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAtact < 1:704595/70‑1 (MQ=255) ttATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAtact < 1:1963142/70‑1 (MQ=255) atataCCGCCCCTGCAACGGATCGTAGTGCCGGTGACGGTTATAGTACAGCCCCGACTCCTCATCAtgctg < 1:1260426/70‑2 (MQ=255) atataCCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATtcctc > 1:2377207/2‑62 (MQ=255) atataCCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATTCCTCATCAtgctg > 1:5647503/2‑70 (MQ=255) ataCCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATagtact > 1:311533/1‑71 (MQ=255) taCCGCCCCTGCAACGGATCGTAGTACCGGTGACGGTTATAGTACAGCCCTGATTCCTCATCATGctgctg > 1:1084867/1‑71 (MQ=255) aCCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:3216827/60‑1 (MQ=255) ccGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTActgct < 1:3679169/71‑1 (MQ=255) ccccTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCg > 1:1675088/1‑71 (MQ=255) ccTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAtact < 1:4925133/60‑1 (MQ=255) ccTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATactactact < 1:2410494/66‑1 (MQ=255) ccTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCgg > 1:1158939/1‑70 (MQ=255) ccTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGc < 1:527883/71‑1 (MQ=255) ctgctgCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:3793395/55‑1 (MQ=255) ctgctgCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:878015/55‑1 (MQ=255) ctgctgCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:2079703/55‑1 (MQ=255) ctgctgCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:1131489/55‑1 (MQ=255) ctgctgCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCa < 1:3059692/71‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:3481780/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:1512071/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:303116/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:4503456/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:4509804/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcatca < 1:105533/54‑1 (MQ=255) tgctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg > 1:3132992/1‑71 (MQ=255) gctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:946158/51‑1 (MQ=255) gctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATtcatcat < 1:1960161/51‑1 (MQ=255) gctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGc > 1:3048195/1‑68 (MQ=255) ctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGt < 1:4689544/70‑1 (MQ=255) ctgcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTc > 1:67307/1‑71 (MQ=255) gcGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGc > 1:5064551/1‑65 (MQ=255) cGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtg < 1:4764864/70‑1 (MQ=255) gTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtgatg < 1:3982140/71‑1 (MQ=255) ttAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtgat < 1:5478436/69‑1 (MQ=255) ttAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtgat < 1:2148182/69‑1 (MQ=255) ttAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtgat < 1:3604419/69‑1 (MQ=255) tAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGaa > 1:587680/1‑71 (MQ=255) tAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGaa > 1:610744/1‑71 (MQ=255) aaTGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATactact > 1:2881159/1‑51 (MQ=255) aaTGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATactact > 1:5012677/1‑51 (MQ=255) aaTGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGaa > 1:1630218/1‑70 (MQ=255) tGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtga > 1:1852637/1‑64 (MQ=255) tGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtg < 1:1380358/63‑1 (MQ=255) tACCGATAATAGTTATAGTACAGCCCTTATTCATCATCAta > 1:5017773/1‑41 (MQ=255) tACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAta > 1:379287/1‑41 (MQ=255) tACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAta > 1:2378101/1‑41 (MQ=255) tACCGATAATAGTTATAGTACAGCCCTGATTCATCATCAta > 1:143625/1‑41 (MQ=255) tACCGATAATAGTTATAGTACAGCCCTGATTAATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTg > 1:3958912/1‑71 (MQ=255) aCCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCtga > 1:86042/1‑60 (MQ=255) ccGATAATAGTTATAGTACAGCCCTGATTCATCATCAtact < 1:4970106/41‑1 (MQ=255) ccGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTa > 1:1186802/1‑66 (MQ=255) ccGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCt > 1:678455/1‑71 (MQ=255) gATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCttt < 1:2099569/71‑2 (MQ=255) taataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttta > 1:548902/1‑68 (MQ=255) taataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttta > 1:5567465/1‑68 (MQ=255) taataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttta < 1:3806569/71‑4 (MQ=255) ataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCg > 1:2202934/1‑44 (MQ=255) ataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCg > 1:2367906/1‑44 (MQ=255) ataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg < 1:4014853/48‑1 (MQ=255) ataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg < 1:1650515/48‑1 (MQ=255) ataGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg < 1:2247157/48‑1 (MQ=255) ggTTATAGTACAGCCCTGATTCCTCATCATgctgct > 1:4151177/2‑36 (MQ=255) ataGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCTTCTGTGTCTCTg > 1:3680414/1‑71 (MQ=255) atACAGGCCGGACTCCTCATCATACTGCTGACCCGGCAgg < 1:2486317/39‑2 (MQ=255) tACAGGCCGGACTCCTCATCATACTGCTGCCCCGGCAGCCggata < 1:5636144/45‑2 (MQ=255) tACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg < 1:3016099/38‑1 (MQ=255) tACAGCCCTGATTCATCATCATACTACTGCTGCGGCAg < 1:920544/38‑1 (MQ=255) aCAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttt < 1:4272338/57‑3 (MQ=255) aCAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttt < 1:1686976/57‑3 (MQ=255) aCAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCtttt < 1:2640343/57‑3 (MQ=255) cAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTAtt > 1:344311/1‑50 (MQ=255) cAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTAtt > 1:2445121/1‑50 (MQ=255) cAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCTTCTGTGTCTCTGTATCTg > 1:2969893/1‑71 (MQ=255) cTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCTTCTGTGTCTCTGTATCTGGTTa > 1:1857810/1‑70 (MQ=255) | GCCTGAGTGTTATACCGCCCCTGCTGCGGTTAATGTTACCGATAATAGTTATAGTACAGCCCTGATTCATCATCATACTACTGCTGCGGCAGTCTGATGAACTATTGCTTCTGTGTCTCTGTATCTGGTTA > Exported/2572727‑2572857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |